PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35251-35300 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 77.6993 | 64.3836 | 97.9592 | 68.5897 | 47 | 26 | 48 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 98.9474 | 100.0000 | 97.9167 | 94.2238 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.9253 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 92.7132 | 47 | 0 | 47 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 37.3333 | 47 | 0 | 47 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 86.1870 | 79.6610 | 93.8776 | 52.8846 | 47 | 12 | 46 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.6296 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 54.5455 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.9695 | 92.1569 | 97.9592 | 90.4854 | 47 | 4 | 48 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.8918 | 92.1569 | 78.6885 | 88.0626 | 47 | 4 | 48 | 13 | 10 | 76.9231 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | het | 85.0531 | 79.6610 | 91.2281 | 72.1951 | 47 | 12 | 52 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | homalt | 81.7391 | 73.4375 | 92.1569 | 88.6414 | 47 | 17 | 47 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 42.3423 | 57.3171 | 33.5714 | 78.0220 | 47 | 35 | 47 | 93 | 26 | 27.9570 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | het | 71.2121 | 92.1569 | 58.0247 | 95.0670 | 47 | 4 | 47 | 34 | 24 | 70.5882 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.9286 | 72.3077 | 100.0000 | 82.0611 | 47 | 18 | 47 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 2.7557 | 1.4642 | 23.3645 | 66.5102 | 47 | 3163 | 50 | 164 | 113 | 68.9024 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.4561 | 70.1493 | 100.0000 | 82.6568 | 47 | 20 | 47 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_siren | * | 59.4937 | 54.6512 | 65.2778 | 81.5385 | 47 | 39 | 47 | 25 | 24 | 96.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 50.5051 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 22.8155 | 12.9477 | 95.9184 | 63.1579 | 47 | 316 | 47 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.3418 | 37.6000 | 97.9592 | 37.9747 | 47 | 78 | 48 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 65.2356 | 95.9184 | 49.4253 | 67.9558 | 47 | 2 | 86 | 88 | 8 | 9.0909 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 52.8122 | 77.0492 | 40.1747 | 78.2319 | 47 | 14 | 92 | 137 | 4 | 2.9197 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 52.5108 | 77.0492 | 39.8268 | 78.2486 | 47 | 14 | 92 | 139 | 4 | 2.8777 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 52.3810 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 88.2653 | 47 | 0 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.0000 | 88.6792 | 100.0000 | 59.8131 | 47 | 6 | 43 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | het | 73.6724 | 66.1972 | 83.0508 | 83.1909 | 47 | 24 | 49 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | het | 73.6724 | 66.1972 | 83.0508 | 83.7912 | 47 | 24 | 49 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | homalt | 90.5115 | 94.0000 | 87.2727 | 92.8664 | 47 | 3 | 48 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 91.2621 | 88.6792 | 94.0000 | 70.4142 | 47 | 6 | 47 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.9592 | 95.9184 | 96.0000 | 82.4561 | 47 | 2 | 48 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | het | 82.5467 | 77.0492 | 88.8889 | 82.1192 | 47 | 14 | 48 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | het | 82.5467 | 77.0492 | 88.8889 | 82.5243 | 47 | 14 | 48 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.9184 | 100.0000 | 92.1569 | 39.2857 | 47 | 0 | 47 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.5691 | 68.1159 | 95.6522 | 67.8322 | 47 | 22 | 44 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.6290 | 90.1961 | 83.3333 | 89.3238 | 46 | 5 | 50 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 76.7322 | 67.6471 | 88.6364 | 73.0061 | 46 | 22 | 39 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 76.7322 | 67.6471 | 88.6364 | 74.2690 | 46 | 22 | 39 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | * | 96.8855 | 97.8723 | 95.9184 | 93.9431 | 46 | 1 | 47 | 2 | 1 | 50.0000 | |
| mlin-fermikit | SNP | * | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 65.9259 | 46 | 35 | 46 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.0343 | 69.6970 | 78.9474 | 95.0607 | 46 | 20 | 45 | 12 | 3 | 25.0000 | |
| mlin-fermikit | SNP | tv | map_siren | hetalt | 72.4409 | 56.7901 | 100.0000 | 65.9259 | 46 | 35 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 88.2507 | 46 | 0 | 45 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | segdup | hetalt | 96.8421 | 93.8776 | 100.0000 | 90.1468 | 46 | 3 | 47 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 39.4150 | 90.1961 | 25.2174 | 86.3339 | 46 | 5 | 58 | 172 | 1 | 0.5814 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 55.9649 | 69.6970 | 46.7532 | 65.8537 | 46 | 20 | 72 | 82 | 24 | 29.2683 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.0979 | 90.1961 | 90.0000 | 90.0398 | 46 | 5 | 45 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.8443 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 98.9247 | 97.8723 | 100.0000 | 36.9863 | 46 | 1 | 46 | 0 | 0 | ||