PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35101-35150 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e1 | homalt | 83.4783 | 71.6418 | 100.0000 | 81.0924 | 48 | 19 | 45 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | homalt | 82.8729 | 75.0000 | 92.5926 | 84.7025 | 48 | 16 | 50 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 35.0904 | 39.3443 | 31.6667 | 53.3679 | 48 | 74 | 57 | 123 | 84 | 68.2927 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 42.8571 | 0.0000 | 0.0000 | 48 | 64 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.8949 | 94.1176 | 80.7018 | 96.1039 | 48 | 3 | 46 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.2039 | 90.5660 | 96.0000 | 91.9094 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.7641 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.2039 | 90.5660 | 96.0000 | 92.9478 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 96.9697 | 94.1176 | 100.0000 | 90.9259 | 48 | 3 | 49 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 81.8182 | 48 | 1 | 48 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 91.6667 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.0734 | 78.6885 | 100.0000 | 54.2857 | 48 | 13 | 48 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | * | 93.2039 | 90.5660 | 96.0000 | 91.7492 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.6254 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e1 | * | 93.2039 | 90.5660 | 96.0000 | 92.8161 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.5926 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 61.7188 | 48 | 4 | 49 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 88.0734 | 90.5660 | 85.7143 | 92.6606 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 88.0734 | 90.5660 | 85.7143 | 93.5409 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 88.0734 | 90.5660 | 85.7143 | 93.7079 | 48 | 5 | 48 | 8 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 90.3067 | 94.1176 | 86.7925 | 94.6138 | 48 | 3 | 46 | 7 | 2 | 28.5714 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_siren | het | 94.1176 | 97.9592 | 90.5660 | 90.9247 | 48 | 1 | 48 | 5 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 82.0513 | 73.8462 | 92.3077 | 88.7931 | 48 | 17 | 48 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 38.1445 | 26.9663 | 65.1515 | 73.2794 | 48 | 130 | 43 | 23 | 4 | 17.3913 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 84.9558 | 90.5660 | 80.0000 | 72.3502 | 48 | 5 | 48 | 12 | 12 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | het | 84.5604 | 78.6885 | 91.3793 | 74.1071 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | het | 84.5604 | 78.6885 | 91.3793 | 74.8918 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 27.5097 | 21.6216 | 37.8049 | 73.8854 | 48 | 174 | 62 | 102 | 48 | 47.0588 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.9321 | 78.6885 | 85.4545 | 77.6423 | 48 | 13 | 47 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8447 | 48 | 0 | 52 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 77.3756 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m1_e0 | * | 95.0495 | 90.5660 | 100.0000 | 85.6250 | 48 | 5 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e0 | * | 95.0495 | 90.5660 | 100.0000 | 87.7660 | 48 | 5 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m2_e1 | * | 95.0495 | 90.5660 | 100.0000 | 88.0519 | 48 | 5 | 46 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 89.5949 | 92.3077 | 87.0370 | 80.0738 | 48 | 4 | 47 | 7 | 6 | 85.7143 | |
| qzeng-custom | INDEL | D1_5 | segdup | hetalt | 92.3077 | 100.0000 | 48 | 4 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 36.6412 | 23.3010 | 85.7143 | 59.4203 | 48 | 158 | 48 | 8 | 8 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | hetalt | 79.3388 | 66.6667 | 97.9592 | 73.6559 | 48 | 24 | 48 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | hetalt | 98.9899 | 100.0000 | 98.0000 | 96.1774 | 48 | 0 | 49 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 82.2064 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.0734 | 81.3559 | 96.0000 | 63.2353 | 48 | 11 | 48 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_siren | het | 93.2039 | 97.9592 | 88.8889 | 91.7808 | 48 | 1 | 48 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.1260 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.9379 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.2039 | 90.5660 | 96.0000 | 93.1319 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.0734 | 78.6885 | 100.0000 | 52.4752 | 48 | 13 | 48 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m1_e0 | * | 94.1176 | 90.5660 | 97.9592 | 93.5948 | 48 | 5 | 48 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e0 | * | 94.1176 | 90.5660 | 97.9592 | 94.3353 | 48 | 5 | 48 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m2_e1 | * | 94.1176 | 90.5660 | 97.9592 | 94.4758 | 48 | 5 | 48 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.0819 | 94.1176 | 79.3103 | 96.0137 | 48 | 3 | 46 | 12 | 4 | 33.3333 | |