PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35051-35100 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.7955 | 0.0000 | 0.0000 | 49 | 1242 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 59.3789 | 75.3846 | 48.9796 | 85.4599 | 49 | 16 | 48 | 50 | 47 | 94.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 4.3324 | 0.0000 | 0.0000 | 49 | 1082 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.0099 | 100.0000 | 98.0392 | 80.3846 | 49 | 0 | 50 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l250_m0_e0 | het | 89.0909 | 92.4528 | 85.9649 | 97.7603 | 49 | 4 | 49 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 83.0508 | 0.0000 | 0.0000 | 49 | 10 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.5789 | 49 | 0 | 49 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.3333 | 92.4528 | 94.2308 | 93.2292 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 93.3333 | 92.4528 | 94.2308 | 94.0092 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 93.3333 | 92.4528 | 94.2308 | 94.1573 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 96.0784 | 0.0000 | 0.0000 | 49 | 2 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.2492 | 92.4528 | 94.0594 | 60.0791 | 49 | 4 | 95 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.2983 | 56.3218 | 77.6786 | 69.6477 | 49 | 38 | 87 | 25 | 15 | 60.0000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m0_e0 | het | 89.0909 | 92.4528 | 85.9649 | 97.0235 | 49 | 4 | 49 | 8 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | * | 67.7170 | 59.7561 | 78.1250 | 86.7769 | 49 | 33 | 50 | 14 | 10 | 71.4286 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m1_e0 | * | 95.1456 | 92.4528 | 98.0000 | 89.3617 | 49 | 4 | 49 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e0 | * | 95.1456 | 92.4528 | 98.0000 | 90.6542 | 49 | 4 | 49 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e1 | * | 95.1456 | 92.4528 | 98.0000 | 90.9091 | 49 | 4 | 49 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 79.6748 | 72.0588 | 89.0909 | 96.9846 | 49 | 19 | 49 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.0784 | 92.4528 | 100.0000 | 70.6587 | 49 | 4 | 49 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.0362 | 72.0588 | 97.9592 | 95.6980 | 49 | 19 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | segdup | homalt | 98.9899 | 98.0000 | 100.0000 | 89.5966 | 49 | 1 | 49 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 98.0000 | 96.0784 | 100.0000 | 92.0195 | 49 | 2 | 49 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | segdup | homalt | 98.9899 | 98.0000 | 100.0000 | 92.1348 | 49 | 1 | 49 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.2883 | 83.0508 | 94.2308 | 77.3913 | 49 | 10 | 49 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.0297 | 94.2308 | 100.0000 | 57.9832 | 49 | 3 | 50 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 23.8806 | 49 | 2 | 51 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 90.7407 | 83.0508 | 100.0000 | 72.3404 | 49 | 10 | 52 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.1538 | 49 | 0 | 49 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.6318 | 49 | 4 | 49 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 20.6349 | 49 | 2 | 50 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 81.1024 | 48 | 1 | 48 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 89.7196 | 81.3559 | 100.0000 | 72.0430 | 48 | 11 | 52 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 80.9524 | 48 | 1 | 48 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 65.1007 | 48 | 4 | 52 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 77.7778 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m1_e0 | * | 94.0775 | 90.5660 | 97.8723 | 85.5385 | 48 | 5 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e0 | * | 94.0775 | 90.5660 | 97.8723 | 87.6640 | 48 | 5 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l125_m2_e1 | * | 94.0775 | 90.5660 | 97.8723 | 87.9487 | 48 | 5 | 46 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 76.2389 | 92.3077 | 64.9351 | 86.6087 | 48 | 4 | 50 | 27 | 20 | 74.0741 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | * | 59.8250 | 53.3333 | 68.1159 | 96.2743 | 48 | 42 | 47 | 22 | 19 | 86.3636 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.8177 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.2500 | 48 | 4 | 49 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | * | 66.6667 | 53.3333 | 88.8889 | 86.2595 | 48 | 42 | 48 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 31.6497 | 19.5122 | 83.7398 | 62.9518 | 48 | 198 | 103 | 20 | 20 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 82.0208 | 70.5882 | 97.8723 | 76.7327 | 48 | 20 | 46 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 49.0051 | 33.5664 | 90.7407 | 98.6432 | 48 | 95 | 49 | 5 | 3 | 60.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 77.4194 | 92.3077 | 66.6667 | 82.1002 | 48 | 4 | 50 | 25 | 17 | 68.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 75.1438 | 70.5882 | 80.3279 | 96.6630 | 48 | 20 | 49 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e0 | homalt | 84.9558 | 73.8462 | 100.0000 | 80.6034 | 48 | 17 | 45 | 0 | 0 | ||