PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34551-34600 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 82.3529 | 0.0000 | 0.0000 | 56 | 12 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 82.3529 | 0.0000 | 0.0000 | 56 | 12 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | segdup | * | 91.0569 | 96.5517 | 86.1538 | 96.9253 | 56 | 2 | 56 | 9 | 2 | 22.2222 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 89.6000 | 81.1594 | 100.0000 | 52.5424 | 56 | 13 | 56 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.6919 | 56 | 1 | 56 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.2787 | 0.0000 | 0.0000 | 56 | 1652 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 18.2169 | 11.6667 | 41.5385 | 87.5836 | 56 | 424 | 54 | 76 | 61 | 80.2632 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 61.9624 | 60.8696 | 63.0952 | 62.8319 | 56 | 36 | 53 | 31 | 30 | 96.7742 | |
| ciseli-custom | INDEL | I6_15 | segdup | * | 43.2432 | 32.0000 | 66.6667 | 89.6021 | 56 | 119 | 54 | 27 | 25 | 92.5926 | |
| cchapple-custom | SNP | ti | map_siren | hetalt | 0.0000 | 98.2456 | 0.0000 | 0.0000 | 56 | 1 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l250_m2_e0 | homalt | 59.5745 | 48.6957 | 76.7123 | 96.9159 | 56 | 59 | 56 | 17 | 11 | 64.7059 | |
| asubramanian-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 96.8893 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 92.5620 | 93.3333 | 91.8033 | 92.7467 | 56 | 4 | 56 | 5 | 1 | 20.0000 | |
| astatham-gatk | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 68.0000 | 56 | 1 | 56 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | segdup | * | 90.3226 | 96.5517 | 84.8485 | 96.3435 | 56 | 2 | 56 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.3434 | 56 | 1 | 56 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | segdup | * | 92.5620 | 96.5517 | 88.8889 | 96.3287 | 56 | 2 | 56 | 7 | 2 | 28.5714 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.2387 | 56 | 1 | 56 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m1_e0 | het | 95.7265 | 94.9153 | 96.5517 | 88.2591 | 56 | 3 | 56 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | het | 94.0171 | 91.6667 | 96.4912 | 96.7410 | 55 | 5 | 55 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | map_siren | hetalt | 98.2143 | 96.4912 | 100.0000 | 68.3908 | 55 | 2 | 55 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.0126 | 79.7101 | 98.2456 | 58.3942 | 55 | 14 | 56 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 94.0171 | 91.6667 | 96.4912 | 96.8733 | 55 | 5 | 55 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 94.8276 | 93.2203 | 96.4912 | 88.7352 | 55 | 4 | 55 | 2 | 1 | 50.0000 | |
| jlack-gatk | SNP | ti | map_siren | hetalt | 94.8276 | 96.4912 | 93.2203 | 77.6515 | 55 | 2 | 55 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 93.1592 | 55 | 2 | 55 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.3016 | 80.8824 | 94.8276 | 96.4827 | 55 | 13 | 55 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e0 | het | 94.0171 | 90.1639 | 98.2143 | 86.0349 | 55 | 6 | 55 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | het | 94.0171 | 90.1639 | 98.2143 | 86.3747 | 55 | 6 | 55 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | hetalt | 65.0004 | 49.1071 | 96.1039 | 90.3266 | 55 | 57 | 74 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 10.6178 | 83.3333 | 5.6701 | 81.1174 | 55 | 11 | 55 | 915 | 8 | 0.8743 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 40.3615 | 29.2553 | 65.0602 | 70.8772 | 55 | 133 | 54 | 29 | 19 | 65.5172 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 29.4957 | 83.3333 | 17.9191 | 92.6664 | 55 | 11 | 62 | 284 | 5 | 1.7606 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 73.0717 | 83.3333 | 65.0602 | 84.3396 | 55 | 11 | 54 | 29 | 28 | 96.5517 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | hetalt | 75.7129 | 65.4762 | 89.7436 | 93.8583 | 55 | 29 | 35 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e0 | het | 85.1770 | 77.4648 | 94.5946 | 79.8365 | 55 | 16 | 70 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m2_e1 | het | 85.1770 | 77.4648 | 94.5946 | 79.9458 | 55 | 16 | 70 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.7097 | 79.7101 | 100.0000 | 53.3898 | 55 | 14 | 55 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 94.4501 | 55 | 2 | 55 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 90.9091 | 91.6667 | 90.1639 | 98.1015 | 55 | 5 | 55 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.4370 | 93.2203 | 91.6667 | 91.4408 | 55 | 4 | 55 | 5 | 1 | 20.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 24.0700 | 40.7407 | 17.0807 | 46.4226 | 55 | 80 | 55 | 267 | 265 | 99.2509 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | het | 79.1367 | 91.6667 | 69.6203 | 89.0733 | 55 | 5 | 55 | 24 | 21 | 87.5000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.0403 | 26.6990 | 50.9615 | 85.3315 | 55 | 151 | 53 | 51 | 50 | 98.0392 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | het | 91.6667 | 93.2203 | 90.1639 | 47.4138 | 55 | 4 | 55 | 6 | 6 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 93.6782 | 55 | 2 | 55 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 94.8276 | 91.6667 | 98.2143 | 97.0727 | 55 | 5 | 55 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 94.5491 | 55 | 2 | 55 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 82.2869 | 90.1639 | 75.6757 | 84.0173 | 55 | 6 | 56 | 18 | 12 | 66.6667 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 98.2143 | 96.4912 | 100.0000 | 94.5437 | 55 | 2 | 55 | 0 | 0 | ||