PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34401-34450 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 79.8653 | 67.0588 | 98.7179 | 91.2752 | 57 | 28 | 77 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 79.7203 | 87.6923 | 73.0769 | 77.0925 | 57 | 8 | 76 | 28 | 3 | 10.7143 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 78.0822 | 0.0000 | 0.0000 | 57 | 16 | 0 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 91.4798 | 57 | 3 | 57 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 91.7151 | 57 | 3 | 57 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9137 | 95.0000 | 94.8276 | 84.1962 | 57 | 3 | 55 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7552 | 96.6102 | 94.9153 | 68.6170 | 57 | 2 | 56 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | homalt | 85.0746 | 85.0746 | 85.0746 | 87.3106 | 57 | 10 | 57 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 79.7299 | 67.0588 | 98.3051 | 62.1795 | 57 | 28 | 58 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.9910 | 61.9565 | 98.2456 | 60.6897 | 57 | 35 | 56 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.4359 | 96.6102 | 98.2759 | 58.5714 | 57 | 2 | 57 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.8511 | 80.2817 | 81.4286 | 43.5484 | 57 | 14 | 57 | 13 | 11 | 84.6154 | |
| jli-custom | INDEL | D16_PLUS | segdup | * | 97.4359 | 98.2759 | 96.6102 | 95.0956 | 57 | 1 | 57 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 78.8104 | 57 | 3 | 57 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | homalt | 95.0000 | 95.0000 | 95.0000 | 92.8401 | 57 | 3 | 57 | 3 | 1 | 33.3333 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | homalt | 95.0000 | 95.0000 | 95.0000 | 92.9988 | 57 | 3 | 57 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 78.6517 | 57 | 3 | 57 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 81.4286 | 68.6747 | 100.0000 | 27.2727 | 57 | 26 | 64 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.6829 | 93.4426 | 91.9355 | 92.0308 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.6829 | 93.4426 | 91.9355 | 92.2111 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | het | 91.9483 | 86.3636 | 98.3051 | 92.3575 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | het | 91.9483 | 86.3636 | 98.3051 | 92.7160 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7552 | 96.6102 | 94.9153 | 69.5876 | 57 | 2 | 56 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.8442 | 86.3636 | 93.6170 | 94.7486 | 57 | 9 | 44 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 66.2857 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.2224 | 57 | 0 | 57 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9137 | 95.0000 | 94.8276 | 83.1884 | 57 | 3 | 55 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 78.8104 | 57 | 3 | 57 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 95.7983 | 96.6102 | 95.0000 | 91.2152 | 57 | 2 | 57 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 3.5250 | 0.0000 | 0.0000 | 57 | 1560 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 3.4566 | 0.0000 | 0.0000 | 57 | 1592 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l250_m2_e1 | homalt | 60.0000 | 49.1379 | 77.0270 | 96.9384 | 57 | 59 | 57 | 17 | 11 | 64.7059 | |
| ckim-dragen | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 72.1698 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.4762 | 82.6087 | 100.0000 | 56.3910 | 57 | 12 | 58 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.9217 | 68.6747 | 98.4848 | 30.5263 | 57 | 26 | 65 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | het | 96.6102 | 96.6102 | 96.6102 | 89.1144 | 57 | 2 | 57 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0000 | 93.4426 | 96.6102 | 89.2139 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0000 | 93.4426 | 96.6102 | 89.4454 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 61.6716 | 83.8235 | 48.7805 | 53.5849 | 57 | 11 | 60 | 63 | 57 | 90.4762 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | * | 54.0541 | 50.0000 | 58.8235 | 80.7547 | 57 | 57 | 60 | 42 | 24 | 57.1429 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | * | 53.4759 | 49.1379 | 58.6538 | 81.9130 | 57 | 59 | 61 | 43 | 25 | 58.1395 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | * | 53.2425 | 49.1379 | 58.0952 | 82.0819 | 57 | 59 | 61 | 44 | 25 | 56.8182 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | het | 77.7080 | 80.2817 | 75.2941 | 89.6341 | 57 | 14 | 64 | 21 | 11 | 52.3810 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e1 | het | 78.0093 | 80.2817 | 75.8621 | 89.5558 | 57 | 14 | 66 | 21 | 11 | 52.3810 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.2727 | 93.4426 | 93.1034 | 80.4054 | 57 | 4 | 54 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 94.2149 | 89.0625 | 100.0000 | 87.5546 | 57 | 7 | 57 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.9085 | 86.3636 | 98.2143 | 90.6667 | 57 | 9 | 55 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 82.3529 | 57 | 3 | 57 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 86.3432 | 96.6102 | 78.0488 | 75.0760 | 57 | 2 | 64 | 18 | 18 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6276 | 96.6102 | 98.6667 | 60.1064 | 57 | 2 | 74 | 1 | 1 | 100.0000 | |