PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34051-34100 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 94.5736 | 89.7059 | 100.0000 | 68.5567 | 61 | 7 | 61 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8254 | 95.3125 | 98.3871 | 89.1986 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.5736 | 100.0000 | 89.7059 | 90.0439 | 61 | 0 | 61 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | het | 91.0448 | 92.4242 | 89.7059 | 95.7233 | 61 | 5 | 61 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | het | 91.0448 | 92.4242 | 89.7059 | 95.8838 | 61 | 5 | 61 | 7 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0824 | 92.4242 | 93.7500 | 93.8164 | 61 | 5 | 60 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.0233 | 86.9565 | 100.0000 | 58.0420 | 60 | 9 | 60 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1736 | 100.0000 | 98.3607 | 94.7952 | 60 | 0 | 60 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1736 | 100.0000 | 98.3607 | 94.9670 | 60 | 0 | 60 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.5740 | 96.7742 | 98.3871 | 84.9148 | 60 | 2 | 61 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3329 | 98.3607 | 98.3051 | 75.0000 | 60 | 1 | 58 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 66.4671 | 60 | 1 | 56 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.7695 | 60 | 0 | 60 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9394 | 60 | 0 | 60 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 92.9853 | 88.2353 | 98.2759 | 77.0751 | 60 | 8 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 92.9853 | 88.2353 | 98.2759 | 77.6062 | 60 | 8 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m1_e0 | het | 96.7742 | 93.7500 | 100.0000 | 86.1751 | 60 | 4 | 60 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3329 | 98.3607 | 98.3051 | 81.7901 | 60 | 1 | 58 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m1_e0 | het | 83.3333 | 93.7500 | 75.0000 | 90.8780 | 60 | 4 | 60 | 20 | 19 | 95.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.1918 | 90.9091 | 75.0000 | 96.2512 | 60 | 6 | 60 | 20 | 3 | 15.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 69.3125 | 68.9655 | 69.6629 | 88.8471 | 60 | 27 | 62 | 27 | 20 | 74.0741 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 89.5522 | 81.0811 | 100.0000 | 84.4156 | 60 | 14 | 60 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 57.1429 | 40.2685 | 98.3607 | 88.5338 | 60 | 89 | 60 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.9430 | 86.9565 | 95.3125 | 86.7495 | 60 | 9 | 61 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | het | 83.1234 | 76.9231 | 90.4110 | 81.1370 | 60 | 18 | 66 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7717 | 60 | 0 | 60 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8904 | 60 | 0 | 60 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l100_m0_e0 | het | 81.3793 | 100.0000 | 68.6047 | 92.0591 | 60 | 0 | 59 | 27 | 20 | 74.0741 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 49.2114 | 63.1579 | 40.3101 | 83.2031 | 60 | 35 | 52 | 77 | 41 | 53.2468 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e0 | hetalt | 64.5161 | 48.0000 | 98.3607 | 95.7639 | 60 | 65 | 60 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 74.0741 | 58.8235 | 100.0000 | 75.2066 | 60 | 42 | 60 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 16.5137 | 9.1047 | 88.6667 | 60.4222 | 60 | 599 | 133 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 16.5137 | 9.1047 | 88.6667 | 60.4222 | 60 | 599 | 133 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.0863 | 74.0741 | 82.5581 | 65.0407 | 60 | 21 | 71 | 15 | 14 | 93.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 94.4882 | 89.5522 | 100.0000 | 87.8543 | 60 | 7 | 60 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 94.4882 | 93.7500 | 95.2381 | 93.7808 | 60 | 4 | 60 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3607 | 96.7742 | 100.0000 | 86.6521 | 60 | 2 | 61 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0931 | 90.9091 | 95.3846 | 93.9309 | 60 | 6 | 62 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 93.7500 | 90.9091 | 96.7742 | 97.0878 | 60 | 6 | 60 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 93.7500 | 90.9091 | 96.7742 | 97.1946 | 60 | 6 | 60 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | map_l150_m0_e0 | homalt | 68.1120 | 89.5522 | 54.9550 | 90.0627 | 60 | 7 | 61 | 50 | 47 | 94.0000 | |
| anovak-vg | SNP | * | tech_badpromoters | het | 84.5070 | 77.9221 | 92.3077 | 45.8333 | 60 | 17 | 60 | 5 | 5 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3182 | 98.3607 | 98.2759 | 81.7035 | 60 | 1 | 57 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.0233 | 88.2353 | 98.3607 | 71.6279 | 60 | 8 | 60 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 93.0233 | 88.2353 | 98.3607 | 72.8889 | 60 | 8 | 60 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 76.9231 | 65.2174 | 93.7500 | 58.4416 | 60 | 32 | 60 | 4 | 1 | 25.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0233 | 90.9091 | 95.2381 | 93.5252 | 60 | 6 | 60 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3607 | 96.7742 | 100.0000 | 85.2300 | 60 | 2 | 61 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.1918 | 84.5070 | 80.0000 | 56.3953 | 60 | 11 | 60 | 15 | 15 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 73.9130 | 60 | 8 | 60 | 0 | 0 | ||