PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33801-33850 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.1832 | 96.9231 | 95.4545 | 84.6512 | 63 | 2 | 63 | 3 | 1 | 33.3333 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.6471 | 91.3043 | 94.0299 | 88.5470 | 63 | 6 | 63 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 70.1319 | 59.4340 | 85.5263 | 73.7024 | 63 | 43 | 65 | 11 | 7 | 63.6364 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 73.9669 | 63 | 5 | 63 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 75.2941 | 63 | 5 | 63 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.4251 | 63 | 2 | 63 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 72.8814 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 74.4000 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 99.2126 | 98.4375 | 100.0000 | 85.0000 | 63 | 1 | 63 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 89.0815 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.5638 | 88.7324 | 80.7692 | 54.9133 | 63 | 8 | 63 | 15 | 15 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 84.0102 | 63 | 2 | 63 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 88.0682 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.4545 | 91.3043 | 100.0000 | 90.5405 | 63 | 6 | 63 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.7839 | 72.4138 | 93.9394 | 99.8971 | 63 | 24 | 62 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 88.2463 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.2903 | 68.4783 | 100.0000 | 58.5526 | 63 | 29 | 63 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 84.0909 | 63 | 2 | 63 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 87.7907 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | het | 96.1832 | 95.4545 | 96.9231 | 96.2165 | 63 | 3 | 63 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e1 | het | 96.1832 | 95.4545 | 96.9231 | 96.3401 | 63 | 3 | 63 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.4545 | 91.3043 | 100.0000 | 91.5663 | 63 | 6 | 63 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l125_m1_e0 | het | 84.2017 | 98.4375 | 73.5632 | 93.0732 | 63 | 1 | 64 | 23 | 16 | 69.5652 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | hetalt | 84.8684 | 75.0000 | 97.7273 | 92.9487 | 63 | 21 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.1832 | 94.0299 | 98.4375 | 89.9054 | 63 | 4 | 63 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 51.6493 | 35.3933 | 95.5224 | 83.2080 | 63 | 115 | 64 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 80.2213 | 68.4783 | 96.8254 | 76.4045 | 63 | 29 | 61 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | homalt | 96.1591 | 94.0299 | 98.3871 | 85.4460 | 63 | 4 | 61 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e0 | het | 85.5453 | 95.4545 | 77.5000 | 97.4202 | 63 | 3 | 62 | 18 | 4 | 22.2222 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | het | 85.5453 | 95.4545 | 77.5000 | 97.4992 | 63 | 3 | 62 | 18 | 4 | 22.2222 | |
| gduggal-bwavard | INDEL | I6_15 | map_siren | homalt | 81.8182 | 70.0000 | 98.4375 | 70.2326 | 63 | 27 | 63 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | hetalt | 59.5248 | 47.7273 | 79.0698 | 93.2917 | 63 | 69 | 34 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | hetalt | 91.9492 | 87.5000 | 96.8750 | 79.3548 | 63 | 9 | 62 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | * | 81.8182 | 73.2558 | 92.6471 | 71.7842 | 63 | 23 | 63 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.6341 | 95.4545 | 74.4186 | 96.0148 | 63 | 3 | 64 | 22 | 2 | 9.0909 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.7143 | 75.0000 | 100.0000 | 58.0247 | 63 | 21 | 34 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.1376 | 76.8293 | 92.9825 | 64.4860 | 63 | 19 | 106 | 8 | 8 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 70.0082 | 55.7522 | 94.0594 | 98.0524 | 63 | 50 | 95 | 6 | 4 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | * | 67.1440 | 61.1650 | 74.4186 | 83.6190 | 63 | 40 | 64 | 22 | 14 | 63.6364 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | * | 77.8754 | 73.2558 | 83.1169 | 87.6603 | 63 | 23 | 64 | 13 | 9 | 69.2308 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.9231 | 96.9231 | 96.9231 | 85.4911 | 63 | 2 | 63 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 85.1064 | 63 | 2 | 63 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.4545 | 91.3043 | 100.0000 | 88.1481 | 63 | 6 | 64 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.0299 | 95.4545 | 92.6471 | 93.4866 | 63 | 3 | 63 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 96.1832 | 92.6471 | 100.0000 | 97.0071 | 63 | 5 | 63 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.4545 | 91.3043 | 100.0000 | 69.3396 | 63 | 6 | 65 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 91.9372 | 86.3014 | 98.3607 | 77.2388 | 63 | 10 | 60 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 54.5455 | 53.8462 | 55.2632 | 91.9718 | 63 | 54 | 63 | 51 | 28 | 54.9020 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 73.9669 | 63 | 5 | 63 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 75.2941 | 63 | 5 | 63 | 0 | 0 | ||