PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33451-33500 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 76.6892 | 69 | 3 | 69 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 79.8809 | 79.3103 | 80.4598 | 91.6985 | 69 | 18 | 70 | 17 | 9 | 52.9412 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 94.6958 | 94.5205 | 94.8718 | 90.3822 | 69 | 4 | 74 | 4 | 2 | 50.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | het | 96.5035 | 97.1831 | 95.8333 | 92.7565 | 69 | 2 | 69 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | het | 96.5035 | 97.1831 | 95.8333 | 92.9550 | 69 | 2 | 69 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 69.6970 | 97.1831 | 54.3307 | 50.1961 | 69 | 2 | 69 | 58 | 58 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.2432 | 92.0000 | 94.5205 | 64.5631 | 69 | 6 | 69 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.8333 | 93.2432 | 98.5714 | 82.3678 | 69 | 5 | 69 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_siren | hetalt | 97.1831 | 95.8333 | 98.5714 | 77.4194 | 69 | 3 | 69 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 53.6424 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.8242 | 97.1831 | 62.1622 | 52.7660 | 69 | 2 | 69 | 42 | 42 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.1961 | 82.1429 | 100.0000 | 59.6491 | 69 | 15 | 69 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.7895 | 92.0000 | 89.6104 | 65.7778 | 69 | 6 | 69 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8723 | 97.1831 | 98.5714 | 91.2060 | 69 | 2 | 69 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1831 | 97.1831 | 97.1831 | 91.2562 | 69 | 2 | 69 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 90.5333 | 69 | 0 | 71 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 79.6040 | 75.0000 | 84.8101 | 64.2534 | 69 | 23 | 67 | 12 | 12 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 47.5592 | 44.5161 | 51.0490 | 71.9424 | 69 | 86 | 219 | 210 | 175 | 83.3333 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | * | 60.7947 | 60.5263 | 61.0656 | 78.8378 | 69 | 45 | 149 | 95 | 77 | 81.0526 | |
| gduggal-snapplat | SNP | * | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | homalt | 92.6174 | 86.2500 | 100.0000 | 54.6053 | 69 | 11 | 69 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 72.3404 | 78.1609 | 67.3267 | 99.9209 | 68 | 19 | 68 | 33 | 18 | 54.5455 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 44.5902 | 28.6920 | 100.0000 | 33.6634 | 68 | 169 | 67 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 43.9926 | 38.2022 | 51.8519 | 68.8462 | 68 | 110 | 84 | 78 | 56 | 71.7949 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e0 | het | 85.0000 | 95.7746 | 76.4045 | 93.4317 | 68 | 3 | 68 | 21 | 19 | 90.4762 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e1 | het | 83.9506 | 95.7746 | 74.7253 | 93.4391 | 68 | 3 | 68 | 23 | 21 | 91.3043 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | * | 81.4371 | 80.0000 | 82.9268 | 93.5433 | 68 | 17 | 68 | 14 | 13 | 92.8571 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 39.7661 | 32.2275 | 51.9084 | 77.2174 | 68 | 143 | 68 | 63 | 54 | 85.7143 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 43.0380 | 36.1702 | 53.1250 | 73.1092 | 68 | 120 | 68 | 60 | 53 | 88.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 87.7419 | 78.1609 | 100.0000 | 99.8911 | 68 | 19 | 68 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.9277 | 95.7746 | 71.5789 | 51.0309 | 68 | 3 | 68 | 27 | 27 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7746 | 93.1507 | 98.5507 | 73.5632 | 68 | 5 | 68 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 97.1429 | 95.7746 | 98.5507 | 90.4300 | 68 | 3 | 68 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1429 | 95.7746 | 98.5507 | 90.6631 | 68 | 3 | 68 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.3077 | 68 | 0 | 68 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_siren | het | 72.9591 | 87.1795 | 62.7273 | 93.3775 | 68 | 10 | 69 | 41 | 36 | 87.8049 | |
| jli-custom | INDEL | I6_15 | map_siren | hetalt | 97.1429 | 94.4444 | 100.0000 | 77.5578 | 68 | 4 | 68 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 95.7746 | 95.7746 | 95.7746 | 94.4876 | 68 | 3 | 68 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 95.7746 | 95.7746 | 95.7746 | 94.6049 | 68 | 3 | 68 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 70.8155 | 68 | 0 | 68 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 62.9032 | 68 | 0 | 69 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | * | 82.8213 | 82.9268 | 82.7160 | 93.4835 | 68 | 14 | 67 | 14 | 10 | 71.4286 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 93.6879 | 91.8919 | 95.5556 | 85.9375 | 68 | 6 | 43 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | * | 95.1788 | 93.1507 | 97.2973 | 90.6210 | 68 | 5 | 72 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | hetalt | 77.9122 | 68.6869 | 90.0000 | 81.9820 | 68 | 31 | 18 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.3104 | 45.6376 | 88.8889 | 56.5341 | 68 | 81 | 136 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | het | 92.9271 | 95.7746 | 90.2439 | 86.6667 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | het | 92.9271 | 95.7746 | 90.2439 | 86.9634 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 53.8085 | 55.7377 | 52.0085 | 38.7306 | 68 | 54 | 246 | 227 | 226 | 99.5595 | |