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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
3301-3350 / 86044 show all
asubramanian-gatkSNPtimap_l100_m2_e1*
62.6607
45.6542
99.8585
84.1129
2259226893225883212
37.5000
jlack-gatkINDEL**hetalt
94.2358
89.4005
99.6240
58.0561
225622675227868678
90.6977
ckim-vqsrSNPtimap_l100_m1_e0het
85.6453
75.3523
99.1953
82.9534
2256273802255718310
5.4645
jlack-gatkINDEL*HG002compoundhethetalt
94.2807
89.4162
99.7049
50.9823
225152665226376762
92.5373
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
93.9157
91.6952
96.2464
33.3267
22502203822436875753
86.0571
ciseli-customSNP*map_l150_m1_e0*
77.9234
73.3052
83.1626
80.2472
2243881712240445361124
24.7795
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
77.7734
73.4547
82.6317
60.7271
2238980913494073442239
30.4875
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
77.7734
73.4547
82.6317
60.7271
2238980913494073442239
30.4875
anovak-vgSNPtvmap_l100_m2_e0*
83.6288
89.4260
78.5375
71.8835
2238626472235161081319
21.5946
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_11to50*
61.6156
61.1636
62.0744
51.1512
2238114211225331376710331
75.0418
mlin-fermikitINDELD6_15**
87.9258
85.7734
90.1891
52.9541
2238037122242124392392
98.0730
astatham-gatkSNP*map_l125_m2_e1het
85.8279
75.3644
99.6653
80.7852
223387302223327527
36.0000
qzeng-customSNP*map_l150_m2_e0*
81.2952
70.0678
96.8072
87.0114
22318953422073728620
85.1648
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
91.8860
90.8028
92.9954
40.2854
2228322572311417411173
67.3751
jpowers-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
81.7040
72.4326
93.6973
66.4963
2228184802224014961307
87.3663
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
93.4170
87.7992
99.8027
58.9642
222653094222614435
79.5455
ghariani-varprowlINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
81.5331
72.3481
93.3894
66.7128
2225585062222215731272
80.8646
jmaeng-gatkSNP*map_l150_m2_e1*
80.8313
69.0469
97.4662
88.8350
2224099702223457842
7.2664
asubramanian-gatkSNPtimap_l100_m2_e0*
62.4314
45.4117
99.8563
84.1830
2223426727222303212
37.5000
ckim-gatkSNP*map_l150_m2_e1*
80.8459
69.0003
97.6016
88.7044
2222599852221954644
8.0586
qzeng-customSNPtimap_l125_m2_e1*
83.3343
72.6815
97.6462
82.9373
22218835122070532443
83.2707
mlin-fermikitSNP*map_l125_m1_e0*
62.6787
48.9002
87.2681
57.2976
22165231622216032332859
88.4318
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
92.8911
87.3497
99.1833
60.3693
2215132082222518336
19.6721
asubramanian-gatkSNP*map_l100_m2_e1het
64.0057
47.1171
99.7652
87.0062
2209724801220915214
26.9231
astatham-gatkSNP*map_l125_m2_e0het
85.8236
75.3598
99.6616
80.7499
220947224220887527
36.0000
qzeng-customSNP*map_l125_m2_e1het
84.1292
74.4636
96.6784
86.6172
22071756921888752615
81.7819
ckim-isaacSNPtimap_l100_m2_e1het
83.1462
71.2597
99.7920
67.1300
22062889822066464
8.6957
ciseli-customSNP*HG002compoundhet*
73.2436
85.0050
64.3413
46.5864
21950387221988121861203
9.8720
qzeng-customSNP*map_l100_m2_e1homalt
87.9899
78.9574
99.3560
60.6459
21947584921600140134
95.7143
jmaeng-gatkSNP*map_l150_m2_e0*
80.7195
68.8748
97.4842
88.8293
2193899142193256641
7.2438
qzeng-customSNPtimap_l125_m2_e0*
83.2073
72.4998
97.6254
82.9474
21937832121790530441
83.2075
ckim-gatkSNP*map_l150_m2_e0*
80.7304
68.8246
97.6170
88.6980
2192299302191653543
8.0374
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50*
63.5093
59.8218
67.6813
39.7409
2189014702302171442911301
78.3214
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6721
99.9543
99.3915
75.2467
218891021889134133
99.2537
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7221
99.9452
99.4999
76.1475
218871221887110109
99.0909
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5837
99.9406
99.2292
75.9456
218861321886170169
99.4118
astatham-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7061
99.9315
99.4818
75.9939
218841521884114113
99.1228
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6970
99.9315
99.4637
76.0277
218841521884118117
99.1525
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6721
99.9315
99.4140
76.0962
218841521884129128
99.2248
jli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8267
99.9315
99.7221
75.0916
2188415218886159
96.7213
anovak-vgSNPtvmap_l100_m1_e0*
83.4211
89.3066
78.2634
70.1430
2188126202184860681313
21.6381
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6856
99.9087
99.4636
76.0319
218792021879118117
99.1525
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
80.8254
69.6160
96.3373
74.6865
21865954321857831448
53.9110
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.8254
69.6160
96.3373
74.6865
21865954321857831448
53.9110
ckim-dragenINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3951
99.8402
98.9540
76.8921
218643521853231230
99.5671
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4496
99.8356
99.0666
73.6565
218633621863206205
99.5146
hfeng-pmm3INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8197
99.8356
99.8037
72.1124
2186336218634342
97.6744
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8037
99.8082
99.7991
72.6490
2185742218574444
100.0000
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5991
99.7991
99.4000
72.8360
218554421701131126
96.1832
hfeng-pmm2INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7580
99.7808
99.7353
72.9432
2185148218515858
100.0000