PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33201-33250 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 43.7439 | 31.3305 | 72.4490 | 90.3733 | 73 | 160 | 71 | 27 | 10 | 37.0370 | |
| ghariani-varprowl | INDEL | * | map_l250_m0_e0 | * | 80.6630 | 93.5897 | 70.8738 | 98.9454 | 73 | 5 | 73 | 30 | 3 | 10.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | het | 72.0679 | 93.5897 | 58.5938 | 93.8343 | 73 | 5 | 75 | 53 | 38 | 71.6981 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 66.6667 | 76.8421 | 58.8710 | 85.4801 | 73 | 22 | 73 | 51 | 49 | 96.0784 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.8239 | 84.8837 | 100.0000 | 75.5352 | 73 | 13 | 80 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9936 | 86.9048 | 100.0000 | 53.7975 | 73 | 11 | 73 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.8052 | 90.1235 | 100.0000 | 75.4209 | 73 | 8 | 73 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | func_cds | homalt | 99.3197 | 98.6486 | 100.0000 | 23.1579 | 73 | 1 | 73 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | * | 87.9518 | 93.5897 | 82.9545 | 98.5586 | 73 | 5 | 73 | 15 | 2 | 13.3333 | |
| jmaeng-gatk | INDEL | D1_5 | map_siren | hetalt | 92.9936 | 86.9048 | 100.0000 | 91.3507 | 73 | 11 | 73 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.0244 | 83.9080 | 94.8052 | 84.8425 | 73 | 14 | 73 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.3333 | 98.6486 | 96.0526 | 81.1414 | 73 | 1 | 73 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | * | map_l250_m0_e0 | * | 90.1235 | 93.5897 | 86.9048 | 97.9749 | 73 | 5 | 73 | 11 | 2 | 18.1818 | |
| egarrison-hhga | INDEL | * | map_l250_m0_e0 | * | 92.9936 | 93.5897 | 92.4051 | 99.7821 | 73 | 5 | 73 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 77.7092 | 98.6486 | 64.1026 | 79.2920 | 73 | 1 | 75 | 42 | 35 | 83.3333 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 86.9048 | 0.0000 | 0.0000 | 73 | 11 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 86.9048 | 0.0000 | 0.0000 | 73 | 11 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6394 | 98.6486 | 98.6301 | 79.1429 | 73 | 1 | 72 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 75.2577 | 0.0000 | 0.0000 | 73 | 24 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 60.1129 | 67.5926 | 54.1237 | 69.5925 | 73 | 35 | 105 | 89 | 26 | 29.2135 | |
| qzeng-custom | INDEL | * | tech_badpromoters | * | 96.0263 | 96.0526 | 96.0000 | 50.9804 | 73 | 3 | 72 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D1_5 | func_cds | homalt | 99.3197 | 98.6486 | 100.0000 | 20.6522 | 73 | 1 | 73 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l250_m0_e0 | * | 91.8239 | 93.5897 | 90.1235 | 97.0513 | 73 | 5 | 73 | 8 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 73.3215 | 58.4000 | 98.4848 | 34.0000 | 73 | 52 | 65 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | * | 97.3333 | 96.0526 | 98.6486 | 91.8051 | 73 | 3 | 73 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.1183 | 81.1111 | 85.2273 | 88.2353 | 73 | 17 | 75 | 13 | 6 | 46.1538 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.6887 | 98.6486 | 94.8052 | 81.8396 | 73 | 1 | 73 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9936 | 86.9048 | 100.0000 | 63.1313 | 73 | 11 | 73 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.4286 | 71.5686 | 100.0000 | 93.4470 | 73 | 29 | 73 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 90.1080 | 83.9080 | 97.2973 | 99.8986 | 73 | 14 | 72 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | * | 92.9936 | 93.5897 | 92.4051 | 99.8422 | 73 | 5 | 73 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | het | 91.6263 | 93.5897 | 89.7436 | 94.0321 | 73 | 5 | 70 | 8 | 2 | 25.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.3436 | 82.7586 | 94.7368 | 83.5498 | 72 | 15 | 72 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m1_e0 | * | 99.3103 | 98.6301 | 100.0000 | 92.1824 | 72 | 1 | 72 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.4410 | 87.8049 | 91.1392 | 77.4286 | 72 | 10 | 72 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 97.9592 | 98.6301 | 97.2973 | 94.2368 | 72 | 1 | 72 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_siren | hetalt | 91.7197 | 85.7143 | 98.6301 | 91.7045 | 72 | 12 | 72 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 99.3103 | 98.6301 | 100.0000 | 91.1001 | 72 | 1 | 72 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m0_e0 | * | 72.3618 | 69.9029 | 75.0000 | 88.7588 | 72 | 31 | 72 | 24 | 21 | 87.5000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 66.3507 | 66.6667 | 66.0377 | 73.7624 | 72 | 36 | 70 | 36 | 36 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | segdup | het | 77.4194 | 86.7470 | 69.9029 | 92.0952 | 72 | 11 | 72 | 31 | 31 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 49.3151 | 45.8599 | 53.3333 | 66.3342 | 72 | 85 | 72 | 63 | 61 | 96.8254 | |
| eyeh-varpipe | SNP | tv | tech_badpromoters | * | 78.6517 | 100.0000 | 64.8148 | 71.8750 | 72 | 0 | 70 | 38 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | func_cds | homalt | 98.6301 | 97.2973 | 100.0000 | 27.2727 | 72 | 2 | 72 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.2973 | 97.2973 | 97.2973 | 81.9512 | 72 | 2 | 72 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | tv | tech_badpromoters | * | 97.2973 | 100.0000 | 94.7368 | 62.5616 | 72 | 0 | 72 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | func_cds | homalt | 98.6301 | 97.2973 | 100.0000 | 24.2105 | 72 | 2 | 72 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | * | 88.3436 | 87.8049 | 88.8889 | 89.8462 | 72 | 10 | 88 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 21.7822 | 12.3499 | 92.2018 | 54.2977 | 72 | 511 | 201 | 17 | 17 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.8971 | 71.2871 | 64.8148 | 95.6696 | 72 | 29 | 70 | 38 | 8 | 21.0526 | |