PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32951-33000 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | * | tech_badpromoters | het | 96.8553 | 100.0000 | 93.9024 | 62.0370 | 77 | 0 | 77 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | tech_badpromoters | * | 94.4785 | 90.5882 | 98.7179 | 44.6809 | 77 | 8 | 77 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.1220 | 60.6299 | 98.7179 | 63.3803 | 77 | 50 | 77 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 71.9626 | 60.6299 | 88.5057 | 86.8976 | 77 | 50 | 77 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | * | 60.8696 | 43.7500 | 100.0000 | 97.6617 | 77 | 99 | 77 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.5349 | 93.9024 | 85.5556 | 75.6098 | 77 | 5 | 77 | 13 | 13 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | tech_badpromoters | het | 95.6522 | 100.0000 | 91.6667 | 54.0984 | 77 | 0 | 77 | 7 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.0000 | 93.9024 | 82.7957 | 75.9690 | 77 | 5 | 77 | 16 | 16 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8553 | 95.0617 | 98.7179 | 79.5812 | 77 | 4 | 77 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 45.2330 | 51.6779 | 40.2174 | 66.9659 | 77 | 72 | 74 | 110 | 110 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7711 | 88.5057 | 97.4684 | 84.9810 | 77 | 10 | 77 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 94.4860 | 90.5882 | 98.7342 | 94.0242 | 77 | 8 | 78 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.2241 | 93.9024 | 83.1933 | 72.9545 | 77 | 5 | 99 | 20 | 18 | 90.0000 | |
| egarrison-hhga | SNP | * | tech_badpromoters | het | 98.7179 | 100.0000 | 97.4684 | 44.7552 | 77 | 0 | 77 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | segdup | het | 93.9024 | 92.7711 | 95.0617 | 92.3368 | 77 | 6 | 77 | 4 | 3 | 75.0000 | |
| ckim-isaac | SNP | tv | map_l250_m0_e0 | homalt | 57.0370 | 39.8964 | 100.0000 | 90.1911 | 77 | 116 | 77 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | * | 95.1063 | 93.9024 | 96.3415 | 90.6712 | 77 | 5 | 79 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 9.3373 | 5.7895 | 24.1150 | 76.0466 | 77 | 1253 | 109 | 343 | 228 | 66.4723 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 72.3005 | 66.3793 | 79.3814 | 88.9647 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 72.3005 | 66.3793 | 79.3814 | 89.1134 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | homalt | 94.6075 | 90.5882 | 99.0000 | 88.8143 | 77 | 8 | 99 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | * | * | 2.3476 | 1.2075 | 42.0851 | 50.8200 | 77 | 6300 | 1098 | 1511 | 872 | 57.7101 | |
| ltrigg-rtg2 | SNP | * | tech_badpromoters | het | 97.4684 | 100.0000 | 95.0617 | 59.0909 | 77 | 0 | 77 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e0 | * | 95.1278 | 93.9024 | 96.3855 | 91.2262 | 77 | 5 | 80 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.4785 | 91.6667 | 97.4684 | 62.0192 | 77 | 7 | 77 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.4735 | 79.3814 | 97.4026 | 83.5118 | 77 | 20 | 75 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6522 | 95.0617 | 96.2500 | 69.2308 | 77 | 4 | 77 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.5882 | 83.6957 | 98.7179 | 55.6818 | 77 | 15 | 77 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 72.9858 | 93.9024 | 59.6899 | 69.3587 | 77 | 5 | 77 | 52 | 48 | 92.3077 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | * | 76.2909 | 67.5439 | 87.6404 | 81.8367 | 77 | 37 | 78 | 11 | 10 | 90.9091 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.1220 | 76.2376 | 74.0385 | 94.4710 | 77 | 24 | 77 | 27 | 17 | 62.9630 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.6123 | 93.8272 | 91.4286 | 75.5814 | 76 | 5 | 96 | 9 | 3 | 33.3333 | |
| qzeng-custom | SNP | * | tech_badpromoters | het | 95.5975 | 98.7013 | 92.6829 | 49.3827 | 76 | 1 | 76 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 50.0000 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 86.8020 | 78.3505 | 97.2973 | 84.9899 | 76 | 21 | 72 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.4233 | 67.8571 | 98.7013 | 83.6518 | 76 | 36 | 76 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | tech_badpromoters | * | 93.8272 | 89.4118 | 98.7013 | 57.6923 | 76 | 9 | 76 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | * | 95.0594 | 92.6829 | 97.5610 | 90.7240 | 76 | 6 | 80 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.8681 | 82.6087 | 96.1538 | 64.8649 | 76 | 16 | 75 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | het | 92.1647 | 91.5663 | 92.7711 | 88.6612 | 76 | 7 | 77 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | hetalt | 75.2274 | 61.2903 | 97.3684 | 92.9630 | 76 | 48 | 37 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m0_e0 | * | 73.5260 | 73.7864 | 73.2673 | 91.6529 | 76 | 27 | 74 | 27 | 20 | 74.0741 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 53.8091 | 57.5758 | 50.5051 | 84.7692 | 76 | 56 | 50 | 49 | 21 | 42.8571 | |
| cchapple-custom | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 56.1111 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.1212 | 87.3563 | 97.4359 | 84.8544 | 76 | 11 | 76 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_siren | het | 91.8695 | 97.4359 | 86.9048 | 96.2700 | 76 | 2 | 73 | 11 | 2 | 18.1818 | |
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | het | 19.4609 | 11.4286 | 65.4867 | 81.3223 | 76 | 589 | 74 | 39 | 19 | 48.7179 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 25.3240 | 74.5098 | 15.2542 | 84.3039 | 76 | 26 | 81 | 450 | 7 | 1.5556 | |
| ckim-dragen | INDEL | * | map_l250_m0_e0 | * | 92.1212 | 97.4359 | 87.3563 | 97.7177 | 76 | 2 | 76 | 11 | 1 | 9.0909 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 79.6787 | 78.3505 | 81.0526 | 92.1811 | 76 | 21 | 77 | 18 | 9 | 50.0000 | |