PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32251-32300 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | map_siren | hetalt | 95.7895 | 91.9192 | 100.0000 | 72.3404 | 91 | 8 | 91 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_siren | hetalt | 95.2880 | 91.9192 | 98.9130 | 72.8614 | 91 | 8 | 91 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_siren | hetalt | 95.2880 | 91.9192 | 98.9130 | 74.2297 | 91 | 8 | 91 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | het | 60.4651 | 43.3333 | 100.0000 | 99.0381 | 91 | 119 | 91 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.8881 | 14.3987 | 91.6667 | 67.0000 | 91 | 541 | 121 | 11 | 11 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 58.9266 | 44.3902 | 87.6190 | 88.5120 | 91 | 114 | 92 | 13 | 12 | 92.3077 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 58.9266 | 44.3902 | 87.6190 | 88.5120 | 91 | 114 | 92 | 13 | 12 | 92.3077 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | het | 77.4539 | 63.6364 | 98.9362 | 93.0060 | 91 | 52 | 93 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 82.7273 | 89.2157 | 77.1186 | 54.2636 | 91 | 11 | 91 | 27 | 27 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | * | 91.9974 | 88.3495 | 95.9596 | 87.8378 | 91 | 12 | 95 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.1142 | 74.5902 | 88.8889 | 51.3514 | 91 | 31 | 128 | 16 | 16 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 64.7519 | 58.7097 | 72.1805 | 82.7048 | 91 | 64 | 96 | 37 | 36 | 97.2973 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | het | 80.6053 | 69.4656 | 96.0000 | 76.1905 | 91 | 40 | 120 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 23.8140 | 14.0000 | 79.6460 | 57.8358 | 91 | 559 | 90 | 23 | 17 | 73.9130 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.8127 | 85.8491 | 96.3855 | 84.5149 | 91 | 15 | 80 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.3992 | 85.8491 | 86.9565 | 83.3031 | 91 | 15 | 80 | 12 | 5 | 41.6667 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.3333 | 90.0990 | 96.8085 | 93.6314 | 91 | 10 | 91 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.9412 | 81.2500 | 95.8333 | 63.6364 | 91 | 21 | 92 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.2260 | 85.8491 | 97.3214 | 84.7411 | 91 | 15 | 109 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | het | 72.2766 | 81.9820 | 64.6259 | 95.9781 | 91 | 20 | 95 | 52 | 22 | 42.3077 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.8850 | 84.2593 | 91.8367 | 77.9775 | 91 | 17 | 90 | 8 | 8 | 100.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 84.2593 | 72.8000 | 100.0000 | 24.6032 | 91 | 34 | 95 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | segdup | het | 95.2381 | 97.8261 | 92.7835 | 96.4154 | 90 | 2 | 90 | 7 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.1564 | 94.7368 | 97.6190 | 90.9968 | 90 | 5 | 82 | 2 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.7853 | 89.1089 | 98.9796 | 92.5362 | 90 | 11 | 97 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.8039 | 0.0000 | 0.0000 | 90 | 2276 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | segdup | het | 96.7742 | 97.8261 | 95.7447 | 96.0338 | 90 | 2 | 90 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_siren | homalt | 97.8261 | 100.0000 | 95.7447 | 85.1501 | 90 | 0 | 90 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2567 | 92.7835 | 100.0000 | 23.7288 | 90 | 7 | 90 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.8367 | 84.9057 | 100.0000 | 73.6544 | 90 | 16 | 93 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 55.9006 | 50.5618 | 62.5000 | 73.6264 | 90 | 88 | 90 | 54 | 51 | 94.4444 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m1_e0 | * | 78.1730 | 76.9231 | 79.4643 | 92.1071 | 90 | 27 | 89 | 23 | 16 | 69.5652 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.7447 | 92.7835 | 98.9011 | 20.8696 | 90 | 7 | 90 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 59.4059 | 43.6893 | 92.7835 | 59.2437 | 90 | 116 | 90 | 7 | 7 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2567 | 92.7835 | 100.0000 | 22.4138 | 90 | 7 | 90 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | segdup | het | 90.9091 | 97.8261 | 84.9057 | 96.1483 | 90 | 2 | 90 | 16 | 2 | 12.5000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.7835 | 89.1089 | 96.7742 | 93.3045 | 90 | 11 | 90 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 17.1882 | 12.9125 | 25.6972 | 75.4883 | 90 | 607 | 129 | 373 | 191 | 51.2064 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | het | 45.1091 | 32.1429 | 75.6098 | 90.5093 | 90 | 190 | 62 | 20 | 2 | 10.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | het | 81.8995 | 71.4286 | 95.9677 | 75.3968 | 90 | 36 | 119 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 62.5501 | 70.8661 | 55.9809 | 69.3548 | 90 | 37 | 117 | 92 | 52 | 56.5217 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | * | 71.5037 | 71.4286 | 71.5789 | 85.3395 | 90 | 36 | 136 | 54 | 37 | 68.5185 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | * | 70.7555 | 70.3125 | 71.2042 | 85.5303 | 90 | 38 | 136 | 55 | 37 | 67.2727 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.9978 | 81.8182 | 82.1782 | 94.8258 | 90 | 20 | 83 | 18 | 6 | 33.3333 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 63.3512 | 58.0645 | 69.6970 | 83.6836 | 90 | 65 | 92 | 40 | 39 | 97.5000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | * | 63.0655 | 62.9371 | 63.1944 | 94.7137 | 90 | 53 | 91 | 53 | 38 | 71.6981 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 81.2587 | 87.3786 | 75.9398 | 90.8842 | 90 | 13 | 101 | 32 | 2 | 6.2500 | |
| ltrigg-rtg2 | INDEL | D6_15 | segdup | het | 97.7502 | 97.8261 | 97.6744 | 92.4495 | 90 | 2 | 84 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | * | 65.2174 | 48.9130 | 97.8261 | 96.9405 | 90 | 94 | 90 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | * | 64.9819 | 48.6486 | 97.8261 | 97.0101 | 90 | 95 | 90 | 2 | 2 | 100.0000 | |