PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32001-32050 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | het | 76.0494 | 78.5714 | 73.6842 | 85.5238 | 99 | 27 | 112 | 40 | 23 | 57.5000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 90.4324 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m0_e0 | het | 92.9577 | 93.3962 | 92.5234 | 96.0647 | 99 | 7 | 99 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.2304 | 79.8387 | 86.9231 | 99.9093 | 99 | 25 | 113 | 17 | 5 | 29.4118 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 93.4271 | 93.3962 | 93.4579 | 92.5952 | 99 | 7 | 100 | 7 | 1 | 14.2857 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 53.1268 | 90.0000 | 37.6866 | 90.4490 | 99 | 11 | 101 | 167 | 31 | 18.5629 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 8.9302 | 5.4426 | 24.8629 | 78.7573 | 99 | 1720 | 136 | 411 | 255 | 62.0438 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 8.9302 | 5.4426 | 24.8629 | 78.7573 | 99 | 1720 | 136 | 411 | 255 | 62.0438 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.9451 | 0.0000 | 0.0000 | 99 | 10376 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | * | 91.2442 | 93.3962 | 89.1892 | 97.0217 | 99 | 7 | 99 | 12 | 4 | 33.3333 | |
| ghariani-varprowl | INDEL | D6_15 | map_siren | homalt | 85.5895 | 75.3846 | 98.9899 | 78.1457 | 98 | 32 | 98 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | * | 83.3611 | 92.4528 | 75.8974 | 95.7498 | 98 | 8 | 148 | 47 | 13 | 27.6596 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | het | 90.7407 | 92.4528 | 89.0909 | 90.5902 | 98 | 8 | 98 | 12 | 2 | 16.6667 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 22.5181 | 16.0393 | 37.7778 | 69.3878 | 98 | 513 | 85 | 140 | 43 | 30.7143 | |
| jpowers-varprowl | INDEL | D6_15 | map_siren | homalt | 85.5895 | 75.3846 | 98.9899 | 77.7528 | 98 | 32 | 98 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1456 | 96.0784 | 94.2308 | 92.3134 | 98 | 4 | 98 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.2308 | 89.0909 | 100.0000 | 89.1403 | 98 | 12 | 96 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.7799 | 90.7407 | 97.0297 | 86.3881 | 98 | 10 | 98 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 63.6988 | 47.5728 | 96.3636 | 56.6929 | 98 | 108 | 53 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | * | 94.6860 | 92.4528 | 97.0297 | 95.6893 | 98 | 8 | 98 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 64.6777 | 48.7562 | 96.0396 | 90.9091 | 98 | 103 | 97 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 31.4024 | 23.6715 | 46.6321 | 77.0784 | 98 | 316 | 90 | 103 | 93 | 90.2913 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m1_e0 | * | 87.4195 | 92.4528 | 82.9060 | 96.3265 | 98 | 8 | 97 | 20 | 5 | 25.0000 | |
| gduggal-bwavard | INDEL | * | HG002complexvar | hetalt | 0.0000 | 2.6494 | 0.0000 | 0.0000 | 98 | 3601 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 0.3892 | 0.0000 | 0.0000 | 98 | 25082 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5124 | 96.0784 | 98.9899 | 59.2593 | 98 | 4 | 98 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | * | 96.5517 | 95.1456 | 98.0000 | 87.8935 | 98 | 5 | 98 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5124 | 96.0784 | 98.9899 | 59.9190 | 98 | 4 | 98 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | segdup | hetalt | 85.5736 | 75.3846 | 98.9474 | 95.6039 | 98 | 32 | 94 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.8883 | 79.0323 | 98.9796 | 99.9286 | 98 | 26 | 97 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | het | 95.1456 | 92.4528 | 98.0000 | 84.0510 | 98 | 8 | 98 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.1550 | 92.4528 | 98.0198 | 92.8923 | 98 | 8 | 99 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 84.5873 | 83.7607 | 85.4305 | 91.2158 | 98 | 19 | 129 | 22 | 4 | 18.1818 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | homalt | 67.8201 | 66.2162 | 69.5035 | 79.0490 | 98 | 50 | 98 | 43 | 39 | 90.6977 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m1_e0 | * | 92.4528 | 92.4528 | 92.4528 | 95.9634 | 98 | 8 | 98 | 8 | 3 | 37.5000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 93.2492 | 92.4528 | 94.0594 | 95.6068 | 98 | 8 | 95 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5134 | 92.4528 | 98.7835 | 71.4781 | 98 | 8 | 406 | 5 | 2 | 40.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | het | 72.6137 | 80.9917 | 65.8065 | 96.1529 | 98 | 23 | 102 | 53 | 22 | 41.5094 | |
| anovak-vg | INDEL | I16_PLUS | HG002complexvar | het | 24.3337 | 14.7368 | 69.7674 | 51.5038 | 98 | 567 | 90 | 39 | 9 | 23.0769 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 95.6145 | 92.4528 | 99.0000 | 93.7422 | 98 | 8 | 99 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | segdup | hetalt | 85.5777 | 75.3846 | 98.9583 | 95.4264 | 98 | 32 | 95 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.6705 | 61.2500 | 86.3636 | 81.0017 | 98 | 62 | 95 | 15 | 4 | 26.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.0290 | 92.4528 | 97.7528 | 87.1573 | 98 | 8 | 87 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5665 | 95.0980 | 96.0396 | 92.6652 | 97 | 5 | 97 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.7007 | 89.8148 | 97.9381 | 75.3181 | 97 | 11 | 95 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9997 | 91.5094 | 96.6292 | 86.9883 | 97 | 9 | 86 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 72.3074 | 65.1007 | 81.3084 | 71.2366 | 97 | 52 | 87 | 20 | 14 | 70.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | homalt | 36.3977 | 22.2477 | 100.0000 | 97.9282 | 97 | 339 | 97 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.8789 | 71.8519 | 92.5000 | 74.9216 | 97 | 38 | 74 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 70.2899 | 54.1899 | 100.0000 | 31.7647 | 97 | 82 | 116 | 0 | 0 | ||