PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31701-31750 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7596 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | het | 97.2477 | 95.4955 | 99.0654 | 95.2018 | 106 | 5 | 106 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | * | 95.0673 | 92.9825 | 97.2477 | 96.1714 | 106 | 8 | 106 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.0400 | 86.8852 | 91.3043 | 57.9268 | 106 | 16 | 126 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | * | 88.2633 | 92.9825 | 84.0000 | 96.7235 | 106 | 8 | 105 | 20 | 5 | 25.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 72.1859 | 74.1259 | 70.3448 | 95.1146 | 106 | 37 | 102 | 43 | 11 | 25.5814 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 56.1021 | 47.7477 | 68.0000 | 49.7487 | 106 | 116 | 136 | 64 | 26 | 40.6250 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 68.9695 | 59.5506 | 81.9277 | 62.6126 | 106 | 72 | 136 | 30 | 29 | 96.6667 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 85.0307 | 86.8852 | 83.2536 | 52.9279 | 106 | 16 | 174 | 35 | 33 | 94.2857 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | homalt | 94.6429 | 92.1739 | 97.2477 | 93.3211 | 106 | 9 | 106 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 22.0217 | 71.6216 | 13.0112 | 43.9194 | 106 | 42 | 105 | 702 | 699 | 99.5726 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6959 | 98.1481 | 97.2477 | 89.4482 | 106 | 2 | 106 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 55.0938 | 52.7363 | 57.6720 | 74.5283 | 106 | 95 | 109 | 80 | 46 | 57.5000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9633 | 106 | 4 | 106 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6959 | 98.1481 | 97.2477 | 89.3969 | 106 | 2 | 106 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9091 | 106 | 4 | 106 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 86.6915 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e1 | * | 95.0673 | 91.3793 | 99.0654 | 87.0303 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0654 | 98.1481 | 100.0000 | 79.5276 | 106 | 2 | 104 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m1_e0 | * | 95.9276 | 92.9825 | 99.0654 | 86.8227 | 106 | 8 | 106 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.6959 | 96.3636 | 99.0654 | 92.3517 | 106 | 4 | 106 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0654 | 98.1481 | 100.0000 | 78.2881 | 106 | 2 | 104 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 86.3520 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | * | 95.0673 | 91.3793 | 99.0654 | 86.7081 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_siren | hetalt | 97.2477 | 94.6429 | 100.0000 | 87.9682 | 106 | 6 | 106 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2706 | 106 | 3 | 106 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 93.9879 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0654 | 98.1481 | 100.0000 | 79.0744 | 106 | 2 | 104 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 93.7328 | 92.9825 | 94.4954 | 96.1389 | 106 | 8 | 103 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_siren | hetalt | 0.0000 | 94.6429 | 0.0000 | 0.0000 | 106 | 6 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | * | 92.9825 | 92.9825 | 92.9825 | 96.4607 | 106 | 8 | 106 | 8 | 3 | 37.5000 | |
| ckim-dragen | INDEL | I1_5 | map_siren | hetalt | 97.2477 | 94.6429 | 100.0000 | 86.4277 | 106 | 6 | 106 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.0673 | 96.3636 | 93.8053 | 89.8473 | 106 | 4 | 106 | 7 | 0 | 0.0000 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2523 | 106 | 3 | 106 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9710 | 106 | 4 | 106 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e0 | * | 90.9871 | 93.8053 | 88.3333 | 97.2515 | 106 | 7 | 106 | 14 | 4 | 28.5714 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | * | 84.2599 | 92.9825 | 77.0335 | 96.0759 | 106 | 8 | 161 | 48 | 13 | 27.0833 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 37.3898 | 74.1259 | 25.0000 | 92.7864 | 106 | 37 | 111 | 333 | 7 | 2.1021 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 4.7196 | 2.6063 | 24.9453 | 76.2474 | 106 | 3961 | 114 | 343 | 228 | 66.4723 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | homalt | 93.8053 | 92.1739 | 95.4955 | 94.7243 | 106 | 9 | 106 | 5 | 2 | 40.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | homalt | 83.4646 | 71.6216 | 100.0000 | 91.9283 | 106 | 42 | 126 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6959 | 98.1481 | 97.2477 | 89.4686 | 106 | 2 | 106 | 3 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 91.0017 | 106 | 4 | 106 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7571 | 106 | 3 | 106 | 3 | 1 | 33.3333 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.7690 | 74.1259 | 93.6937 | 90.8036 | 106 | 37 | 104 | 7 | 5 | 71.4286 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.1481 | 96.3636 | 100.0000 | 90.9710 | 106 | 4 | 106 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | * | 92.6432 | 90.5983 | 94.7826 | 88.7586 | 106 | 11 | 109 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 66.2956 | 51.4563 | 93.1624 | 81.5748 | 106 | 100 | 109 | 8 | 4 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 84.0880 | 84.1270 | 84.0491 | 91.3252 | 106 | 20 | 137 | 26 | 6 | 23.0769 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 73.9830 | 60.2273 | 95.8824 | 96.2121 | 106 | 70 | 163 | 7 | 4 | 57.1429 | |