PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31601-31650 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 92.7039 | 86.4000 | 100.0000 | 88.0952 | 108 | 17 | 110 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.3199 | 80.0000 | 91.3978 | 73.4286 | 108 | 27 | 85 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | * | 95.1542 | 93.1034 | 97.2973 | 86.5942 | 108 | 8 | 108 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | * | 94.7368 | 93.1034 | 96.4286 | 86.7612 | 108 | 8 | 108 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | homalt | 64.6707 | 53.7313 | 81.2030 | 84.0528 | 108 | 93 | 108 | 25 | 23 | 92.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 92.1300 | 108 | 4 | 109 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 74.2243 | 108 | 4 | 108 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | * | 96.0000 | 95.5752 | 96.4286 | 96.3170 | 108 | 5 | 108 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4286 | 94.7368 | 98.1818 | 87.5425 | 108 | 6 | 108 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 15.2225 | 9.4654 | 38.8554 | 56.6013 | 108 | 1033 | 129 | 203 | 109 | 53.6946 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 59.8171 | 57.4468 | 62.3913 | 40.7216 | 108 | 80 | 287 | 173 | 145 | 83.8150 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 94.7368 | 92.3077 | 97.2973 | 92.3183 | 108 | 9 | 108 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.5246 | 98.1818 | 80.5970 | 89.8638 | 108 | 2 | 108 | 26 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l250_m0_e0 | homalt | 29.3080 | 17.1701 | 100.0000 | 98.5248 | 108 | 521 | 108 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 75.1152 | 108 | 4 | 108 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 95.5752 | 94.7368 | 96.4286 | 96.5770 | 108 | 6 | 108 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5349 | 99.0741 | 100.0000 | 80.8044 | 107 | 1 | 105 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 95.5357 | 94.6903 | 96.3964 | 96.4918 | 107 | 6 | 107 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 95.9641 | 93.8596 | 98.1651 | 87.8348 | 107 | 7 | 107 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5349 | 99.0741 | 100.0000 | 80.6985 | 107 | 1 | 105 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.8326 | 93.8596 | 100.0000 | 87.1239 | 107 | 7 | 107 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_siren | hetalt | 97.2727 | 95.5357 | 99.0741 | 87.9867 | 107 | 5 | 107 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | homalt | 97.7169 | 98.1651 | 97.2727 | 94.8187 | 107 | 2 | 107 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | * | map_l250_m1_e0 | homalt | 97.7169 | 98.1651 | 97.2727 | 94.9192 | 107 | 2 | 107 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.7169 | 95.5357 | 100.0000 | 75.2887 | 107 | 5 | 107 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | homalt | 97.7169 | 98.1651 | 97.2727 | 93.5748 | 107 | 2 | 107 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.7169 | 95.5357 | 100.0000 | 75.9551 | 107 | 5 | 107 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 92.6407 | 93.8596 | 91.4530 | 88.9934 | 107 | 7 | 107 | 10 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | homalt | 98.1651 | 98.1651 | 98.1651 | 94.2144 | 107 | 2 | 107 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 72.9338 | 86.2903 | 63.1579 | 90.1262 | 107 | 17 | 84 | 49 | 4 | 8.1633 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | homalt | 94.6903 | 92.2414 | 97.2727 | 93.4368 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 19.5758 | 15.3515 | 27.0073 | 33.7097 | 107 | 590 | 111 | 300 | 272 | 90.6667 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | * | 86.1910 | 84.9206 | 87.5000 | 87.6423 | 107 | 19 | 133 | 19 | 18 | 94.7368 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | het | 96.8326 | 96.3964 | 97.2727 | 94.8526 | 107 | 4 | 107 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 78.6765 | 69.9346 | 89.9160 | 64.3713 | 107 | 46 | 107 | 12 | 10 | 83.3333 | |
| gduggal-bwafb | INDEL | I6_15 | map_siren | het | 85.3548 | 74.8252 | 99.3333 | 74.6193 | 107 | 36 | 149 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 92.9049 | 92.2414 | 93.5780 | 88.1907 | 107 | 9 | 102 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 92.9336 | 92.2414 | 93.6364 | 88.3103 | 107 | 9 | 103 | 7 | 2 | 28.5714 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.3162 | 86.2903 | 92.5620 | 89.7544 | 107 | 17 | 112 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_siren | homalt | 66.5025 | 82.3077 | 55.7895 | 83.1709 | 107 | 23 | 106 | 84 | 76 | 90.4762 | |
| ciseli-custom | INDEL | I1_5 | func_cds | homalt | 91.8455 | 89.9160 | 93.8596 | 19.1489 | 107 | 12 | 107 | 7 | 6 | 85.7143 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5349 | 99.0741 | 100.0000 | 81.1151 | 107 | 1 | 105 | 0 | 0 | ||
| ckim-isaac | INDEL | * | segdup | hetalt | 89.9263 | 82.3077 | 99.0991 | 92.8479 | 107 | 23 | 110 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.0906 | 99.0741 | 99.1071 | 88.6525 | 107 | 1 | 111 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5349 | 99.0741 | 100.0000 | 79.9728 | 107 | 1 | 147 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m1_e0 | homalt | 98.1651 | 98.1651 | 98.1651 | 95.2464 | 107 | 2 | 107 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 95.5357 | 96.3964 | 94.6903 | 94.5725 | 107 | 4 | 107 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 93.4498 | 93.8596 | 93.0435 | 95.5461 | 107 | 7 | 107 | 8 | 1 | 12.5000 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | hetalt | 97.7169 | 95.5357 | 100.0000 | 88.2029 | 107 | 5 | 107 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | * | 95.1111 | 92.2414 | 98.1651 | 85.7516 | 107 | 9 | 107 | 2 | 2 | 100.0000 | |