PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
3101-3150 / 86044 show all
jpowers-varprowlSNPtvmap_l100_m2_e1*
97.6564
97.6506
97.6622
73.7732
2468959424689591141
23.8579
ltrigg-rtg2SNPtvmap_l100_m2_e0*
99.1825
98.6258
99.7454
56.6822
2468934424684635
7.9365
qzeng-customSNPtvmap_sirenhet
91.9469
86.2561
98.4416
72.2639
24677393224636390264
67.6923
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.1108
97.1608
97.0609
55.5769
2463972024636746544
72.9223
astatham-gatkSNPtimap_l125_m1_e0*
91.1797
83.9407
99.7852
74.5658
246244711246205329
54.7170
gduggal-bwavardINDEL*HG002complexvarhomalt
95.0919
90.9942
99.5761
40.5691
2459324342395810266
64.7059
qzeng-customSNPtimap_l100_m2_e1het
87.6458
79.3605
97.8627
80.9215
24570639024451534415
77.7154
gduggal-snapfbSNPtvmap_l100_m2_e0*
97.5647
98.0226
97.1111
71.6649
2453849524539730232
31.7808
gduggal-snapvardSNPtvmap_l100_m2_e1*
94.5392
97.0059
92.1948
76.2078
24526757244272068154
7.4468
gduggal-bwaplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
88.2228
79.6951
98.7942
76.5609
24515624624497299252
84.2809
cchapple-customSNPtvmap_l100_m2_e0*
97.1975
97.9028
96.5023
71.7198
2450852524500888133
14.9775
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
92.7883
86.7091
99.7841
61.8573
245043756244935343
81.1321
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.1231
96.5890
97.6631
54.5313
2449486524490586552
94.1980
gduggal-bwavardSNPtvmap_l100_m2_e0*
95.9136
97.8069
94.0922
76.6349
2448454924400153299
6.4621
ckim-vqsrSNP*map_l125_m1_e0*
69.8181
53.9590
98.8800
88.0425
2445820869244552775
1.8051
gduggal-bwafbINDEL*HG002compoundhet*
86.4141
81.5955
91.8376
53.1940
2444655143787233663207
95.2763
eyeh-varpipeSNPtvmap_l100_m1_e0*
97.3811
99.7714
95.1026
69.0013
244455624274125021
1.6800
jpowers-varprowlSNPtvmap_l100_m2_e0*
97.6510
97.6471
97.6549
73.7409
2444458924444587140
23.8501
ciseli-customSNPtimap_l100_m2_e1het
83.3126
78.8921
88.2578
75.0429
24425653524398324686
2.6494
bgallagher-sentieonSNPtvmap_l100_m1_e0*
99.3526
99.5959
99.1104
66.8404
24402992439821931
14.1553
hfeng-pmm3SNPtvmap_l100_m1_e0*
99.6386
99.5919
99.6854
64.5700
24401100243977710
12.9870
hfeng-pmm2SNPtvmap_l100_m1_e0*
99.4801
99.5919
99.3687
67.2876
244011002439715517
10.9677
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
81.0523
77.6490
84.7677
58.0295
2438870202517645244294
94.9160
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
81.0523
77.6490
84.7677
58.0295
2438870202517645244294
94.9160
dgrover-gatkSNPtvmap_l100_m1_e0*
99.4329
99.4817
99.3842
68.2243
243741272437015129
19.2053
anovak-vgINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
96.3676
96.1079
96.6286
54.1432
2437298724047839436
51.9666
raldana-dualsentieonSNPtvmap_l100_m1_e0*
99.3984
99.4735
99.3234
65.0677
24372129243681665
3.0121
hfeng-pmm1SNPtvmap_l100_m1_e0*
99.6055
99.4531
99.7584
64.1006
24367134243635917
28.8136
jli-customSNPtvmap_l100_m1_e0*
99.4197
99.2980
99.5417
62.1631
243291722432811230
26.7857
ckim-dragenSNPtvmap_l100_m1_e0*
98.6576
99.2817
98.0414
69.3325
243251762432848645
9.2593
rpoplin-dv42SNPtvmap_l100_m1_e0*
99.2751
99.2204
99.3298
64.0760
243101912430616480
48.7805
egarrison-hhgaSNPtvmap_l100_m1_e0*
99.4963
99.1715
99.8233
63.2033
24298203242984319
44.1860
jlack-gatkSNPtvmap_l100_m1_e0*
96.1408
99.1511
93.3080
76.0138
24293208242891742100
5.7405
gduggal-bwafbSNPtvmap_l100_m1_e0*
98.8766
99.1511
98.6037
68.5198
242932082429334455
15.9884
gduggal-snapvardSNPtvmap_l100_m2_e0*
94.5205
97.0079
92.1574
76.1726
24284749241952059151
7.3337
qzeng-customSNPtimap_l100_m2_e0het
87.5433
79.2078
97.8395
80.9563
24255636724137533415
77.8612
ghariani-varprowlSNPtvmap_l100_m1_e0*
97.8612
98.9756
96.7717
72.1277
2425025124251809135
16.6873
gduggal-bwaplatSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
92.4984
86.7234
99.0973
67.6373
2424737122426222175
33.9367
ckim-gatkSNP*map_l125_m2_e1het
88.6934
81.7679
96.9006
87.2177
2423654042423077556
7.2258
jmaeng-gatkSNP*map_l125_m2_e1het
88.5956
81.7375
96.7099
87.4772
2422754132422182452
6.3107
gduggal-bwaplatINDEL*HG002complexvarhomalt
93.8564
89.6215
98.5114
56.9159
24222280524155365314
86.0274
ltrigg-rtg1SNPtvmap_l100_m1_e0*
99.2885
98.8286
99.7528
57.2287
2421428724208609
15.0000
ndellapenna-hhgaSNPtvmap_l100_m1_e0*
99.2885
98.8123
99.7692
62.3765
24210291242105624
42.8571
ciseli-customSNP*map_l100_m1_e0homalt
90.3629
89.6308
91.1071
60.1980
2420328002409623521848
78.5714
gduggal-snapplatSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
90.1322
86.5088
94.0725
74.1670
241873772242501528165
10.7984
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.8065
98.5086
99.1063
41.3831
2417436624176218209
95.8716
jli-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.9784
98.5004
99.4611
39.0941
2417236824179131123
93.8931
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.7654
98.4474
99.0855
41.1980
2415938124161223213
95.5157
ltrigg-rtg2SNPtvmap_l100_m1_e0*
99.1748
98.6001
99.7563
54.0248
2415834324152595
8.4746
gduggal-bwaplatSNPtvmap_sirenhet
91.2244
84.4245
99.2157
78.7828
2415344562416119146
24.0838