PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 625 626 627 628 629 630 631 632 633 ... 1720 1721 » 31401-31450 / 86044 show all
ckim-dragen	INDEL	D6_15	map_l125_m1_e0	*	96.1373	95.7265	96.5517	91.3883	112	5	112	4	1	25.0000
ckim-dragen	INDEL	I6_15	map_l100_m2_e0	*	96.9697	96.5517	97.3913	88.8023	112	4	112	3	0	0.0000
ckim-dragen	INDEL	I6_15	map_l100_m2_e1	*	96.9697	96.5517	97.3913	89.0580	112	4	112	3	0	0.0000
ckim-dragen	INDEL	*	map_l100_m2_e0	hetalt	94.5148	89.6000	100.0000	86.6040	112	13	114	0	0
ckim-dragen	INDEL	*	map_l250_m2_e1	homalt	96.5517	96.5517	96.5517	95.0491	112	4	112	4	4	100.0000
ghariani-varprowl	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	29.0805	20.8955	47.8070	73.7629	112	424	109	119	119	100.0000
ghariani-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	65.1163	73.2026	58.6387	74.4652	112	41	112	79	62	78.4810
hfeng-pmm1	INDEL	*	map_l100_m1_e0	hetalt	94.9153	90.3226	100.0000	87.1298	112	12	113	0	0
gduggal-snapfb	INDEL	I1_5	map_l125_m0_e0	homalt	96.9508	98.2456	95.6897	91.9107	112	2	111	5	2	40.0000
dgrover-gatk	INDEL	D6_15	map_l125_m1_e0	*	96.9697	95.7265	98.2456	91.4286	112	5	112	2	1	50.0000
ckim-vqsr	INDEL	D6_15	map_l125_m1_e0	*	96.1373	95.7265	96.5517	92.8129	112	5	112	4	1	25.0000
egarrison-hhga	INDEL	*	map_l250_m2_e0	homalt	97.3913	97.3913	97.3913	95.3176	112	3	112	3	1	33.3333
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	85.8238	91.8033	80.5755	80.1994	112	10	112	27	16	59.2593
eyeh-varpipe	INDEL	*	map_l250_m2_e0	homalt	96.7898	97.3913	96.1957	95.4410	112	3	177	7	7	100.0000
ckim-isaac	INDEL	I1_5	map_l150_m2_e1	homalt	70.4403	54.9020	98.2456	86.5882	112	92	112	2	0	0.0000
ltrigg-rtg2	INDEL	D6_15	map_l125_m1_e0	*	97.8166	95.7265	100.0000	85.7516	112	5	109	0	0
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	90.7398	88.1890	93.4426	69.3467	112	15	114	8	7	87.5000
qzeng-custom	INDEL	D6_15	map_l100_m1_e0	het	78.1102	88.8889	69.6629	87.0262	112	14	186	81	8	9.8765
ndellapenna-hhga	INDEL	*	map_l250_m2_e0	homalt	97.8166	97.3913	98.2456	95.1136	112	3	112	2	1	50.0000
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	86.0387	90.3226	82.1429	92.1875	112	12	115	25	5	20.0000
mlin-fermikit	INDEL	I1_5	map_l150_m2_e1	homalt	65.2941	54.4118	81.6176	84.1676	111	93	111	25	23	92.0000
mlin-fermikit	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	88.3886	90.9836	85.9375	59.6215	111	11	110	18	18	100.0000
ndellapenna-hhga	INDEL	I1_5	map_l250_m2_e1	*	97.3684	97.3684	97.3684	96.2818	111	3	111	3	1	33.3333
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.6188	83.4586	99.1228	73.6111	111	22	113	1	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	*	83.8108	77.6224	91.0714	91.0328	111	32	102	10	3	30.0000
qzeng-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	78.9414	87.4016	71.9745	49.1909	111	16	113	44	39	88.6364
hfeng-pmm2	INDEL	D1_5	map_l250_m1_e0	het	95.6897	100.0000	91.7355	95.6159	111	0	111	10	1	10.0000
hfeng-pmm3	INDEL	*	map_l100_m2_e0	hetalt	94.0678	88.8000	100.0000	87.3176	111	14	113	0	0
hfeng-pmm2	INDEL	*	map_l100_m2_e0	hetalt	94.0678	88.8000	100.0000	88.2780	111	14	113	0	0
hfeng-pmm3	INDEL	I1_5	map_l250_m2_e1	*	96.9432	97.3684	96.5217	95.7407	111	3	111	4	2	50.0000
eyeh-varpipe	INDEL	I1_5	map_l250_m2_e1	*	97.1292	97.3684	96.8912	95.0078	111	3	187	6	5	83.3333
gduggal-bwafb	INDEL	D6_15	map_l100_m1_e0	het	92.5000	88.0952	97.3684	82.6879	111	15	148	4	1	25.0000
eyeh-varpipe	INDEL	I6_15	map_siren	het	82.9333	77.6224	89.0244	72.7121	111	32	146	18	16	88.8889
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	68.9441	52.6066	100.0000	53.3613	111	100	111	0	0
gduggal-bwavard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	11.0979	9.3988	13.5468	44.1924	111	1070	110	702	699	99.5726
jmaeng-gatk	INDEL	*	map_l250_m2_e0	homalt	97.3684	96.5217	98.2301	95.4673	111	4	111	2	2	100.0000
jpowers-varprowl	INDEL	D1_5	map_l250_m2_e0	het	93.2773	91.7355	94.8718	96.5022	111	10	111	6	3	50.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	82.2326	82.2222	82.2430	78.7698	111	24	88	19	18	94.7368
ltrigg-rtg2	INDEL	*	map_l100_m2_e1	hetalt	91.3580	84.0909	100.0000	91.6667	111	21	113	0	0
ltrigg-rtg2	INDEL	*	map_l250_m2_e0	homalt	98.2301	96.5217	100.0000	92.6733	111	4	111	0	0
ltrigg-rtg1	INDEL	*	map_l100_m2_e1	hetalt	90.9869	84.0909	99.1150	91.3476	111	21	112	1	1	100.0000
ltrigg-rtg1	INDEL	D6_15	map_l125_m1_e0	*	97.3684	94.8718	100.0000	86.2069	111	6	108	0	0
rpoplin-dv42	INDEL	*	map_l100_m2_e0	hetalt	92.8870	88.8000	97.3684	89.1841	111	14	111	3	0	0.0000
bgallagher-sentieon	INDEL	D1_5	map_l250_m1_e0	het	96.5217	100.0000	93.2773	95.6962	111	0	111	8	1	12.5000
anovak-vg	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	67.1212	72.5490	62.4490	44.0639	111	42	306	184	163	88.5870
ckim-isaac	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	76.0576	66.0714	89.6000	69.0594	111	57	112	13	4	30.7692
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	76.3337	62.0112	99.2593	29.3194	111	68	134	1	1	100.0000
dgrover-gatk	INDEL	*	map_l250_m2_e1	homalt	96.5217	95.6897	97.3684	95.6322	111	5	111	3	2	66.6667
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	93.2878	89.5161	97.3913	86.9615	111	13	112	3	1	33.3333
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	34.3653	22.6531	71.1538	64.7856	111	379	111	45	35	77.7778

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge