PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30701-30750 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 88.1961 | 82.5806 | 94.6309 | 78.0882 | 128 | 27 | 141 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | het | 77.5758 | 97.7099 | 64.3216 | 90.1143 | 128 | 3 | 128 | 71 | 65 | 91.5493 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 18.9971 | 10.7113 | 83.8926 | 61.0966 | 128 | 1067 | 125 | 24 | 18 | 75.0000 | |
| ghariani-varprowl | INDEL | I6_15 | HG002compoundhet | het | 7.4887 | 61.5385 | 3.9869 | 41.9228 | 128 | 80 | 171 | 4118 | 4099 | 99.5386 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | * | 80.7499 | 74.8538 | 87.6543 | 97.7406 | 128 | 43 | 142 | 20 | 5 | 25.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 69.0619 | 63.3663 | 75.8824 | 95.3892 | 128 | 74 | 129 | 41 | 7 | 17.0732 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0901 | 96.9697 | 99.2366 | 79.4349 | 128 | 4 | 130 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 91.0377 | 128 | 3 | 128 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 59.1795 | 86.4865 | 44.9782 | 68.8011 | 128 | 20 | 103 | 126 | 124 | 98.4127 | |
| jlack-gatk | INDEL | D6_15 | map_siren | homalt | 98.0843 | 98.4615 | 97.7099 | 81.5752 | 128 | 2 | 128 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.4615 | 96.9697 | 100.0000 | 80.1527 | 128 | 4 | 130 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 89.0445 | 128 | 3 | 128 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e1 | het | 95.8801 | 94.8148 | 96.9697 | 86.5990 | 128 | 7 | 128 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | het | 94.8148 | 97.7099 | 92.0863 | 88.5691 | 128 | 3 | 128 | 11 | 6 | 54.5455 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | het | 92.4188 | 89.5105 | 95.5224 | 83.4568 | 128 | 15 | 128 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 71.1111 | 76.1905 | 66.6667 | 71.4710 | 128 | 40 | 128 | 64 | 63 | 98.4375 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 24.4217 | 20.7792 | 29.6128 | 67.8388 | 128 | 488 | 130 | 309 | 308 | 99.6764 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.3872 | 86.4865 | 94.6565 | 71.5217 | 128 | 20 | 124 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 75.2837 | 62.1359 | 95.4887 | 76.4184 | 128 | 78 | 127 | 6 | 4 | 66.6667 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 62.4562 | 45.8781 | 97.7941 | 50.0000 | 128 | 151 | 133 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0901 | 96.9697 | 99.2366 | 80.0912 | 128 | 4 | 130 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.0092 | 76.6467 | 95.4198 | 68.8095 | 128 | 39 | 125 | 6 | 5 | 83.3333 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.8491 | 96.9466 | 94.7761 | 90.6750 | 127 | 4 | 127 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.1388 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0994 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 91.3669 | 84.1060 | 100.0000 | 44.5887 | 127 | 24 | 128 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_siren | homalt | 97.6923 | 97.6923 | 97.6923 | 86.7482 | 127 | 3 | 127 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 94.0741 | 96.9466 | 91.3669 | 92.3416 | 127 | 4 | 127 | 12 | 2 | 16.6667 | |
| ckim-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0994 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 93.4443 | 94.0741 | 92.8230 | 84.6999 | 127 | 8 | 194 | 15 | 8 | 53.3333 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.1975 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.8244 | 61.6505 | 98.4615 | 58.8608 | 127 | 79 | 128 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.6981 | 96.2121 | 99.2308 | 79.2000 | 127 | 5 | 129 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.1311 | 96.9466 | 93.3824 | 90.3546 | 127 | 4 | 127 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0796 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | * | 72.2457 | 74.2690 | 70.3297 | 96.0219 | 127 | 44 | 128 | 54 | 24 | 44.4444 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.7509 | 80.8917 | 93.5252 | 60.6232 | 127 | 30 | 130 | 9 | 4 | 44.4444 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | het | 93.1342 | 96.9466 | 89.6104 | 87.6997 | 127 | 4 | 138 | 16 | 8 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | homalt | 97.3180 | 97.6923 | 96.9466 | 82.5333 | 127 | 3 | 127 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 91.0394 | 84.1060 | 99.2188 | 46.4435 | 127 | 24 | 127 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | * | 93.7214 | 88.8112 | 99.2063 | 83.9490 | 127 | 16 | 125 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9348 | 96.9466 | 96.9231 | 83.3760 | 127 | 4 | 126 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.5017 | 79.3750 | 100.0000 | 76.3916 | 127 | 33 | 123 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 76.2868 | 62.2549 | 98.4848 | 88.1508 | 127 | 77 | 195 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 65.2610 | 83.5526 | 53.5398 | 93.1390 | 127 | 25 | 121 | 105 | 14 | 13.3333 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.6416 | 80.8917 | 95.6204 | 51.7606 | 127 | 30 | 131 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 43.3731 | 29.1284 | 84.8837 | 60.6107 | 127 | 309 | 219 | 39 | 39 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 32.6838 | 19.8128 | 93.2836 | 48.6590 | 127 | 514 | 125 | 9 | 4 | 44.4444 | |
| ghariani-varprowl | INDEL | D6_15 | segdup | * | 69.3267 | 66.4921 | 72.4138 | 94.6180 | 127 | 64 | 126 | 48 | 46 | 95.8333 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.2728 | 88.8112 | 66.8367 | 94.9485 | 127 | 16 | 131 | 65 | 9 | 13.8462 | |