PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30651-30700 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 82.5459 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 96.6925 | 97.0370 | 96.3504 | 87.3733 | 131 | 4 | 132 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.9707 | 97.0370 | 94.9275 | 92.4672 | 131 | 4 | 131 | 7 | 2 | 28.5714 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 94.2446 | 97.0370 | 91.6084 | 92.2744 | 131 | 4 | 131 | 12 | 2 | 16.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.9068 | 92.2535 | 95.6204 | 43.3884 | 131 | 11 | 131 | 6 | 6 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.7612 | 97.0370 | 98.4962 | 87.8205 | 131 | 4 | 131 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | * | 89.0690 | 91.6084 | 86.6667 | 94.5750 | 131 | 12 | 130 | 20 | 3 | 15.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0370 | 97.0370 | 97.0370 | 86.7257 | 131 | 4 | 131 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | het | 95.2727 | 91.6084 | 99.2424 | 84.2670 | 131 | 12 | 131 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2029 | 90.9091 | 97.7444 | 92.5113 | 130 | 13 | 130 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.7114 | 85.5263 | 92.1429 | 90.3448 | 130 | 22 | 129 | 11 | 4 | 36.3636 | |
| mlin-fermikit | INDEL | I6_15 | HG002compoundhet | het | 11.9006 | 62.5000 | 6.5764 | 49.1309 | 130 | 78 | 102 | 1449 | 1446 | 99.7930 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.3343 | 83.8710 | 91.0959 | 81.8408 | 130 | 25 | 133 | 13 | 13 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_siren | * | 92.1758 | 90.9091 | 93.4783 | 95.3892 | 130 | 13 | 129 | 9 | 1 | 11.1111 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | homalt | 79.5181 | 67.3575 | 97.0370 | 94.8157 | 130 | 63 | 131 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 73.9245 | 59.9078 | 96.5035 | 42.1053 | 130 | 87 | 138 | 5 | 5 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e1 | het | 94.8905 | 96.2963 | 93.5252 | 92.4743 | 130 | 5 | 130 | 9 | 2 | 22.2222 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.2366 | 98.4848 | 100.0000 | 80.0604 | 130 | 2 | 132 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | func_cds | * | 86.3919 | 81.7610 | 91.5789 | 51.7766 | 130 | 29 | 174 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | het | 74.0557 | 68.4211 | 80.7018 | 98.2243 | 130 | 60 | 138 | 33 | 5 | 15.1515 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 67.5325 | 67.7083 | 67.3575 | 24.9027 | 130 | 62 | 130 | 63 | 63 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 39.0586 | 33.8542 | 46.1538 | 69.3790 | 130 | 254 | 132 | 154 | 146 | 94.8052 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 56.2841 | 56.5217 | 56.0484 | 43.7642 | 130 | 100 | 139 | 109 | 101 | 92.6606 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 63.8821 | 48.3271 | 94.2029 | 88.6792 | 130 | 139 | 130 | 8 | 2 | 25.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e0 | het | 78.1594 | 99.2366 | 64.4670 | 90.5379 | 130 | 1 | 127 | 70 | 58 | 82.8571 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4312 | 90.9091 | 73.7430 | 94.9535 | 130 | 13 | 132 | 47 | 9 | 19.1489 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 30.3025 | 78.7879 | 18.7586 | 80.9861 | 130 | 35 | 136 | 589 | 11 | 1.8676 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.5601 | 18.5079 | 28.8840 | 55.7171 | 129 | 568 | 132 | 325 | 240 | 73.8462 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | homalt | 74.0771 | 78.6585 | 70.0000 | 91.3793 | 129 | 35 | 133 | 57 | 53 | 92.9825 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | het | 64.7498 | 67.8947 | 61.8834 | 96.6176 | 129 | 61 | 138 | 85 | 29 | 34.1176 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 74.7337 | 62.6214 | 92.6554 | 54.8469 | 129 | 77 | 164 | 13 | 12 | 92.3077 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.8506 | 97.7273 | 100.0000 | 79.4025 | 129 | 3 | 131 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 89.5833 | 95.5556 | 84.3137 | 91.6485 | 129 | 6 | 129 | 24 | 3 | 12.5000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 62.9507 | 62.6214 | 63.2836 | 70.3802 | 129 | 77 | 212 | 123 | 48 | 39.0244 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.7360 | 87.1622 | 94.6154 | 66.3212 | 129 | 19 | 123 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.6804 | 77.2455 | 96.1832 | 69.2488 | 129 | 38 | 126 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | het | 94.4089 | 98.4733 | 90.6667 | 87.1023 | 129 | 2 | 136 | 14 | 9 | 64.2857 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.2624 | 73.7143 | 95.6522 | 64.2487 | 129 | 46 | 132 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | * | 65.8098 | 50.0000 | 96.2406 | 83.4577 | 129 | 129 | 128 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | homalt | 98.8506 | 99.2308 | 98.4733 | 81.7803 | 129 | 1 | 129 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 64.8241 | 48.3146 | 98.4733 | 80.0000 | 129 | 138 | 129 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m0_e0 | homalt | 45.6637 | 29.5872 | 100.0000 | 97.2939 | 129 | 307 | 129 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_siren | homalt | 98.0843 | 98.4615 | 97.7099 | 87.2070 | 128 | 2 | 128 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | homalt | 69.1892 | 52.8926 | 100.0000 | 93.1660 | 128 | 114 | 128 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l150_m1_e0 | het | 51.0679 | 42.8094 | 63.2743 | 93.1411 | 128 | 171 | 143 | 83 | 7 | 8.4337 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0901 | 96.9697 | 99.2366 | 79.9080 | 128 | 4 | 130 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 66.4196 | 55.6522 | 82.3529 | 58.1967 | 128 | 102 | 126 | 27 | 19 | 70.3704 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 16.1412 | 0.0000 | 0.0000 | 128 | 665 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_siren | het | 93.7729 | 89.5105 | 98.4615 | 87.4396 | 128 | 15 | 128 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | het | 95.5224 | 97.7099 | 93.4307 | 90.1722 | 128 | 3 | 128 | 9 | 2 | 22.2222 | |