PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30451-30500 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.5017 | 91.3907 | 100.0000 | 45.4887 | 138 | 13 | 145 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 86.7676 | 77.5281 | 98.5075 | 65.9033 | 138 | 40 | 132 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 89.9023 | 87.8981 | 92.0000 | 66.5924 | 138 | 19 | 138 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.4918 | 82.6347 | 100.0000 | 64.3038 | 138 | 29 | 141 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.6088 | 0.0000 | 0.0000 | 138 | 3686 | 0 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.5570 | 77.0950 | 98.6667 | 27.5362 | 138 | 41 | 148 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | * | tech_badpromoters | * | 93.2432 | 87.8981 | 99.2806 | 31.5271 | 138 | 19 | 138 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.4918 | 82.6347 | 100.0000 | 64.3038 | 138 | 29 | 141 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l250_m0_e0 | homalt | 35.9844 | 21.9396 | 100.0000 | 98.1124 | 138 | 491 | 138 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_siren | * | 93.8073 | 95.8042 | 91.8919 | 95.1823 | 137 | 6 | 136 | 12 | 2 | 16.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 45.6693 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.5301 | 85.0932 | 80.1170 | 31.8725 | 137 | 24 | 137 | 34 | 15 | 44.1176 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.9231 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 45.8824 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | * | 72.9497 | 74.4565 | 71.5026 | 96.2008 | 137 | 47 | 138 | 55 | 24 | 43.6364 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.5116 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2618 | 91.9463 | 94.6154 | 77.5475 | 137 | 12 | 123 | 7 | 5 | 71.4286 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8546 | 96.4789 | 99.2701 | 42.4370 | 137 | 5 | 136 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8546 | 96.4789 | 99.2701 | 42.6778 | 137 | 5 | 136 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.8168 | 22.2403 | 45.2229 | 54.6898 | 137 | 479 | 142 | 172 | 160 | 93.0233 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 53.6696 | 72.8723 | 42.4765 | 23.3535 | 137 | 51 | 1132 | 1533 | 1532 | 99.9348 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | het | 65.8766 | 65.8654 | 65.8879 | 86.4385 | 137 | 71 | 141 | 73 | 16 | 21.9178 | |
| gduggal-bwaplat | SNP | * | tech_badpromoters | * | 92.8814 | 87.2611 | 99.2754 | 66.7470 | 137 | 20 | 137 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | * | 58.5470 | 41.3897 | 100.0000 | 98.8731 | 137 | 194 | 137 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 33.0430 | 20.5706 | 83.9344 | 60.8974 | 137 | 529 | 256 | 49 | 49 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 33.0430 | 20.5706 | 83.9344 | 60.8974 | 137 | 529 | 256 | 49 | 49 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | HG002compoundhet | het | 78.5751 | 65.8654 | 97.3628 | 22.2080 | 137 | 71 | 5907 | 160 | 152 | 95.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 15.4909 | 90.1316 | 8.4736 | 78.2178 | 137 | 15 | 151 | 1631 | 23 | 1.4102 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8571 | 96.4789 | 99.2754 | 41.7722 | 137 | 5 | 137 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.5116 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.1316 | 82.0359 | 100.0000 | 64.7355 | 137 | 30 | 140 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.6460 | 66.5049 | 99.2593 | 44.6721 | 137 | 69 | 134 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_siren | het | 96.0059 | 95.8042 | 96.2085 | 84.5308 | 137 | 6 | 203 | 8 | 2 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8571 | 96.4789 | 99.2754 | 43.2099 | 137 | 5 | 137 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_siren | * | 93.4849 | 95.8042 | 91.2752 | 95.1513 | 137 | 6 | 136 | 13 | 2 | 15.3846 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 45.6693 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 54.3651 | 51.8939 | 57.0833 | 88.8786 | 137 | 127 | 137 | 103 | 60 | 58.2524 | |
| ckim-gatk | INDEL | I6_15 | map_siren | het | 96.8198 | 95.8042 | 97.8571 | 88.4774 | 137 | 6 | 137 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8571 | 96.4789 | 99.2754 | 41.7722 | 137 | 5 | 137 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1404 | 95.8042 | 96.4789 | 92.5654 | 137 | 6 | 137 | 5 | 4 | 80.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 48.0237 | 81.0651 | 34.1176 | 68.8073 | 137 | 32 | 58 | 112 | 111 | 99.1071 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | * | 60.5938 | 47.4048 | 83.9506 | 83.7513 | 137 | 152 | 136 | 26 | 21 | 80.7692 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 27.9022 | 100.0000 | 137 | 354 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.1814 | 73.6559 | 85.6031 | 65.5957 | 137 | 49 | 220 | 37 | 23 | 62.1622 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.1316 | 82.0359 | 100.0000 | 68.2540 | 137 | 30 | 140 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.8720 | 92.5676 | 42.0945 | 50.6085 | 137 | 11 | 205 | 282 | 275 | 97.5177 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.7571 | 85.6250 | 87.9195 | 87.5626 | 137 | 23 | 131 | 18 | 10 | 55.5556 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 77.0538 | 84.4720 | 70.8333 | 31.6726 | 136 | 25 | 136 | 56 | 35 | 62.5000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.8330 | 85.0000 | 84.6667 | 87.5519 | 136 | 24 | 127 | 23 | 23 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m0_e0 | het | 58.2441 | 41.7178 | 96.4539 | 77.8302 | 136 | 190 | 136 | 5 | 0 | 0.0000 | |