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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
3001-3050 / 86044 show all
anovak-vgSNPtimap_l125_m1_e0*
81.2273
86.8110
76.3184
74.3923
2546638692525378361746
22.2818
jmaeng-gatkINDELD6_15**
97.9970
97.6008
98.3964
55.6203
2546662625465415366
88.1928
astatham-gatkSNP*HG002compoundhet*
99.2284
98.6058
99.8588
41.2826
25462360254553634
94.4444
anovak-vgINDEL*HG002complexvarhomalt
75.7278
94.2021
63.3115
49.8629
254601567259401503214199
94.4585
astatham-gatkSNPtimap_l125_m2_e0*
91.2512
84.0571
99.7920
76.0047
254344824254305329
54.7170
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
69.6812
67.0967
72.4727
44.4064
2543112471366771393113653
98.0045
egarrison-hhgaSNP*HG002compoundhet*
98.8848
98.3812
99.3937
39.7483
2540441825408155114
73.5484
gduggal-snapplatSNP*map_l100_m2_e0homalt
95.9129
92.2138
99.9212
63.8760
253802143253642015
75.0000
jpowers-varprowlINDEL*HG002complexvarhomalt
94.9661
93.9024
96.0543
47.7714
253791648252691038887
85.4528
cchapple-customINDELD6_15**
97.8623
97.1869
98.5472
48.1960
2535873426658393348
88.5496
ghariani-varprowlINDEL*HG002complexvarhomalt
94.5817
93.8099
95.3663
48.0723
253541673252531227858
69.9267
qzeng-customSNP*HG002compoundhet*
98.2824
98.1489
98.4164
46.9711
2534447825604412148
35.9223
asubramanian-gatkINDELD6_15**
97.6552
97.1179
98.1984
55.4499
2534075225346465420
90.3226
hfeng-pmm1INDELD6_15**
98.1898
97.0872
99.3178
50.8773
2533276025331174155
89.0805
ltrigg-rtg1INDELD6_15**
98.2810
97.0642
99.5288
47.5098
253267662513311976
63.8655
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8817
99.8462
99.9171
55.0271
2532039253232116
76.1905
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8718
99.8265
99.9171
55.1617
2531544253182116
76.1905
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8383
99.8028
99.8737
55.5058
2530950253073217
53.1250
gduggal-snapfbSNP*HG002compoundhet*
83.3987
98.0094
72.5790
48.5976
25308514255799664581
6.0120
ckim-vqsrSNP*HG002compoundhet*
98.9056
97.9940
99.8343
41.9777
25304518253014232
76.1905
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8087
99.7595
99.8579
55.0764
2529861253003629
80.5556
rpoplin-dv42INDELD6_15**
97.4536
96.9493
97.9633
52.8335
2529679625300526501
95.2471
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7712
99.7476
99.7949
55.7977
2529564252985225
48.0769
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8126
99.7437
99.8815
55.8039
2529465252973017
56.6667
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8303
99.7319
99.9289
55.1102
2529168252941812
66.6667
jli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8263
99.7319
99.9210
54.5963
2529168252932015
75.0000
hfeng-pmm2INDELD6_15**
98.0668
96.9186
99.2426
51.7103
2528880425288193170
88.0829
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8164
99.6885
99.9447
54.6733
2528079252811410
71.4286
hfeng-pmm3INDELD6_15**
98.0738
96.8879
99.2891
51.0206
2528081225279181162
89.5028
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7868
99.6845
99.8894
55.8752
2527980252822815
53.5714
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8105
99.6688
99.9525
54.4112
252758425277127
58.3333
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8006
99.6609
99.9407
54.5675
2527386252751511
73.3333
cchapple-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7531
99.6254
99.8811
52.9851
2526495252093021
70.0000
ndellapenna-hhgaSNP*HG002compoundhet*
98.3720
97.8158
98.9346
39.5539
2525856425258272233
85.6618
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7867
99.6017
99.9723
54.3769
252581012526073
42.8571
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7571
99.6017
99.9130
55.8468
25258101252612214
63.6364
ciseli-customSNP*map_l100_m0_e0*
81.1632
76.8673
85.9677
74.4366
2524475972519841131141
27.7413
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7194
99.5347
99.9047
51.7499
25241118251642415
62.5000
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6427
99.5150
99.7707
54.4892
25236123252365845
77.5862
raldana-dualsentieonINDELD6_15**
97.6719
96.7155
98.6474
52.2270
2523585725235346333
96.2428
ltrigg-rtg1SNP*HG002compoundhet*
98.7318
97.7074
99.7779
38.3623
25230592251605617
30.3571
eyeh-varpipeSNPtvmap_l100_m2_e1*
97.4090
99.7785
95.1495
70.7126
252275625050127721
1.6445
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5852
99.4085
99.7626
54.0647
25209150252096050
83.3333
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5010
99.4006
99.6016
52.3483
252071522674910795
88.7850
mlin-fermikitSNP*map_l100_m1_e0het
71.0748
55.5458
98.6565
54.0604
25195201642518734311
3.2070
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6222
99.3336
99.9125
51.6616
25190169251132214
63.6364
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5573
99.3217
99.7940
54.6839
25187172251855239
75.0000
bgallagher-sentieonSNPtvmap_l100_m2_e1*
99.3647
99.6084
99.1222
68.5080
25184992518022331
13.9013
hfeng-pmm3SNPtvmap_l100_m2_e1*
99.6458
99.6045
99.6872
66.3290
25183100251797910
12.6582
hfeng-pmm2SNPtvmap_l100_m2_e1*
99.4903
99.6045
99.3764
68.9155
251831002517915817
10.7595