PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30151-30200 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.0888 | 95.0000 | 97.2028 | 90.0070 | 152 | 8 | 139 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.5740 | 152 | 3 | 153 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.4291 | 95.0000 | 95.8621 | 89.7959 | 152 | 8 | 139 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.3123 | 89.9408 | 70.9302 | 81.7410 | 152 | 17 | 61 | 25 | 25 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | homalt | 95.2978 | 92.6829 | 98.0645 | 90.6514 | 152 | 12 | 152 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.2859 | 92.6829 | 98.0392 | 77.6316 | 152 | 12 | 150 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6858 | 98.0645 | 99.3151 | 81.1856 | 152 | 3 | 145 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 16.9454 | 0.0000 | 0.0000 | 152 | 745 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | segdup | het | 40.6839 | 28.2528 | 72.6496 | 97.2794 | 152 | 386 | 170 | 64 | 21 | 32.8125 | |
| anovak-vg | INDEL | I16_PLUS | HG002compoundhet | * | 11.6860 | 7.0929 | 33.1593 | 41.3476 | 152 | 1991 | 127 | 256 | 126 | 49.2188 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.1246 | 96.8153 | 97.4359 | 68.8623 | 152 | 5 | 152 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.4138 | 152 | 3 | 153 | 0 | 0 | ||
| astatham-gatk | SNP | * | tech_badpromoters | * | 97.7492 | 96.8153 | 98.7013 | 49.3421 | 152 | 5 | 152 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 19.1677 | 0.0000 | 0.0000 | 152 | 641 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | homalt | 94.7040 | 92.6829 | 96.8153 | 91.0541 | 152 | 12 | 152 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.4481 | 96.8153 | 98.0892 | 60.3535 | 152 | 5 | 154 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.4061 | 98.0645 | 98.7500 | 82.6464 | 152 | 3 | 158 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.9241 | 152 | 3 | 153 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 57.2505 | 41.9890 | 89.9408 | 89.1458 | 152 | 210 | 152 | 17 | 17 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.3636 | 76.0000 | 100.0000 | 50.1639 | 152 | 48 | 152 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | segdup | * | 87.8562 | 79.5812 | 98.0519 | 96.2676 | 152 | 39 | 151 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.6792 | 24.6753 | 34.2342 | 68.3084 | 152 | 464 | 152 | 292 | 286 | 97.9452 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 82.2093 | 152 | 3 | 153 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0228 | 98.0645 | 100.0000 | 83.4056 | 152 | 3 | 153 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 76.5743 | 94.4099 | 64.4068 | 35.1648 | 152 | 9 | 152 | 84 | 84 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0228 | 98.0645 | 100.0000 | 82.9596 | 152 | 3 | 152 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0228 | 98.0645 | 100.0000 | 82.8442 | 152 | 3 | 152 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.4276 | 94.3750 | 98.5714 | 88.7910 | 151 | 9 | 138 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 89.6142 | 93.7888 | 85.7955 | 36.9176 | 151 | 10 | 151 | 25 | 25 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6928 | 97.4194 | 100.0000 | 83.3333 | 151 | 4 | 151 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.7657 | 94.3750 | 99.2806 | 89.2830 | 151 | 9 | 138 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 81.9477 | 151 | 4 | 152 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.0986 | 94.3750 | 95.8333 | 89.6403 | 151 | 9 | 138 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 82.4480 | 151 | 4 | 152 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.4274 | 94.3750 | 96.5035 | 89.8148 | 151 | 9 | 138 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5138 | 97.4194 | 95.6250 | 82.3982 | 151 | 4 | 153 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 88.2868 | 81.1828 | 96.7532 | 67.3729 | 151 | 35 | 149 | 5 | 4 | 80.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 82.8829 | 151 | 4 | 152 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.9930 | 98.6928 | 82.7027 | 78.7356 | 151 | 2 | 153 | 32 | 31 | 96.8750 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.6797 | 98.6928 | 98.6667 | 68.1529 | 151 | 2 | 148 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.7013 | 84.8315 | 92.9412 | 72.5806 | 151 | 27 | 158 | 12 | 4 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.4441 | 98.6928 | 76.9001 | 45.2692 | 151 | 2 | 1032 | 310 | 290 | 93.5484 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2174 | 92.0732 | 84.6715 | 84.6413 | 151 | 13 | 116 | 21 | 19 | 90.4762 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3734 | 97.4194 | 99.3464 | 82.9050 | 151 | 4 | 152 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3452 | 98.6928 | 98.0000 | 69.6970 | 151 | 2 | 147 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | func_cds | * | 94.6708 | 94.9686 | 94.3750 | 37.7432 | 151 | 8 | 151 | 9 | 7 | 77.7778 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 52.5500 | 71.5640 | 41.5188 | 24.1862 | 151 | 60 | 1170 | 1648 | 1641 | 99.5752 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6928 | 97.4194 | 100.0000 | 82.8829 | 151 | 4 | 152 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l125_m0_e0 | homalt | 69.1076 | 53.1690 | 98.6928 | 80.5591 | 151 | 133 | 151 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l250_m1_e0 | * | 65.7952 | 49.5082 | 98.0519 | 96.9691 | 151 | 154 | 151 | 3 | 3 | 100.0000 | |