PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29901-29950 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | homalt | 86.3737 | 80.0995 | 93.7143 | 93.0223 | 161 | 40 | 164 | 11 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 52.0907 | 81.7259 | 38.2284 | 55.9096 | 161 | 36 | 164 | 265 | 242 | 91.3208 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | homalt | 98.1651 | 98.1707 | 98.1595 | 90.6697 | 161 | 3 | 160 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4748 | 95.8333 | 99.1736 | 75.2556 | 161 | 7 | 360 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.6140 | 100.0000 | 54.5763 | 33.4086 | 161 | 0 | 161 | 134 | 134 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.5638 | 41.4948 | 68.0851 | 72.2550 | 161 | 227 | 160 | 75 | 74 | 98.6667 | |
| jmaeng-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 91.1923 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m1_e0 | het | 91.2276 | 84.7368 | 98.7952 | 90.9635 | 161 | 29 | 164 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.1158 | 93.6047 | 98.7654 | 70.5455 | 161 | 11 | 160 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 90.1855 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.0752 | 90.4494 | 95.8580 | 71.6918 | 161 | 17 | 162 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 87.7517 | 81.7259 | 94.7368 | 67.1785 | 161 | 36 | 162 | 9 | 8 | 88.8889 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | hetalt | 77.8589 | 64.7773 | 97.5610 | 66.3244 | 160 | 87 | 160 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 79.2133 | 76.5550 | 82.0628 | 67.6812 | 160 | 49 | 183 | 40 | 33 | 82.5000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 49.9696 | 38.2775 | 71.9457 | 61.2960 | 160 | 258 | 159 | 62 | 56 | 90.3226 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 23.8291 | 16.6493 | 41.8960 | 68.3446 | 160 | 801 | 137 | 190 | 58 | 30.5263 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.3413 | 97.5610 | 93.2203 | 88.0081 | 160 | 4 | 110 | 8 | 6 | 75.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.6255 | 94.6746 | 64.3564 | 81.0507 | 160 | 9 | 65 | 36 | 36 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.8416 | 89.8876 | 98.1595 | 71.7504 | 160 | 18 | 160 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5610 | 96.9697 | 98.1595 | 91.0734 | 160 | 5 | 160 | 3 | 1 | 33.3333 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.5610 | 96.9697 | 98.1595 | 91.0341 | 160 | 5 | 160 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5777 | 97.5610 | 95.6140 | 88.7352 | 160 | 4 | 109 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | * | map_l150_m0_e0 | homalt | 97.8593 | 97.5610 | 98.1595 | 90.6751 | 160 | 4 | 160 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 93.2945 | 89.8876 | 96.9697 | 75.5193 | 160 | 18 | 160 | 5 | 3 | 60.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m0_e0 | homalt | 97.5610 | 97.5610 | 97.5610 | 91.6327 | 160 | 4 | 160 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 85.7909 | 77.6699 | 95.8084 | 83.6435 | 160 | 46 | 160 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.7536 | 89.8876 | 95.8084 | 77.0289 | 160 | 18 | 160 | 7 | 5 | 71.4286 | |
| mlin-fermikit | INDEL | D6_15 | segdup | * | 86.7731 | 83.7696 | 90.0000 | 91.8182 | 160 | 31 | 162 | 18 | 17 | 94.4444 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.4676 | 94.6746 | 61.3692 | 51.5690 | 160 | 9 | 502 | 316 | 146 | 46.2025 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m1_e0 | * | 96.6767 | 93.5673 | 100.0000 | 90.7736 | 160 | 11 | 161 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | func_cds | * | 86.4865 | 88.8889 | 84.2105 | 28.0303 | 160 | 20 | 160 | 30 | 19 | 63.3333 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 95.8714 | 96.9697 | 94.7977 | 90.1143 | 160 | 5 | 164 | 9 | 1 | 11.1111 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 84.8290 | 78.0488 | 92.8994 | 77.9661 | 160 | 45 | 157 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 84.8290 | 78.0488 | 92.8994 | 77.9661 | 160 | 45 | 157 | 12 | 12 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | func_cds | * | 97.8593 | 100.0000 | 95.8084 | 53.8674 | 159 | 0 | 160 | 7 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | func_cds | * | 99.6865 | 100.0000 | 99.3750 | 37.9845 | 159 | 0 | 159 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | homalt | 98.1481 | 96.9512 | 99.3750 | 85.5856 | 159 | 5 | 159 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.9512 | 96.3636 | 97.5460 | 90.9595 | 159 | 6 | 159 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | D1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 40.9594 | 159 | 0 | 160 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.4646 | 98.7578 | 72.2727 | 35.4839 | 159 | 2 | 159 | 61 | 61 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | func_cds | * | 99.6885 | 100.0000 | 99.3789 | 53.3333 | 159 | 0 | 160 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.9050 | 98.7578 | 72.9358 | 36.8116 | 159 | 2 | 159 | 59 | 59 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | func_cds | * | 99.6865 | 100.0000 | 99.3750 | 33.6100 | 159 | 0 | 159 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | func_cds | * | 97.2644 | 100.0000 | 94.6746 | 52.7933 | 159 | 0 | 160 | 9 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 159 | 0 | 160 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | func_cds | * | 99.6885 | 100.0000 | 99.3789 | 38.0769 | 159 | 0 | 160 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 41.1765 | 159 | 0 | 160 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 71.9457 | 56.1837 | 100.0000 | 55.9889 | 159 | 124 | 158 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 47.7477 | 40.9794 | 57.1942 | 72.9835 | 159 | 229 | 159 | 119 | 85 | 71.4286 | |
| gduggal-bwafb | INDEL | I6_15 | segdup | * | 94.3926 | 90.8571 | 98.2143 | 89.2994 | 159 | 16 | 165 | 3 | 3 | 100.0000 | |