PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29801-29850 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.2206 | 93.2203 | 89.3048 | 64.9813 | 165 | 12 | 167 | 20 | 20 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9086 | 98.2143 | 97.6048 | 77.2169 | 165 | 3 | 163 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m0_e0 | * | 95.9251 | 93.7500 | 98.2036 | 86.8297 | 165 | 11 | 164 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 83.3333 | 71.7391 | 99.3976 | 70.7746 | 165 | 65 | 165 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m0_e0 | * | 90.8072 | 93.7500 | 88.0435 | 93.4682 | 165 | 11 | 162 | 22 | 5 | 22.7273 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 68.7500 | 83.7563 | 58.3039 | 53.7582 | 165 | 32 | 165 | 118 | 105 | 88.9831 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m1_e0 | * | 95.1009 | 96.4912 | 93.7500 | 94.8882 | 165 | 6 | 165 | 11 | 1 | 9.0909 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | het | 82.6482 | 81.6832 | 83.6364 | 95.8716 | 165 | 37 | 184 | 36 | 9 | 25.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 72.5275 | 68.1818 | 77.4648 | 69.3966 | 165 | 77 | 165 | 48 | 46 | 95.8333 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m1_e0 | * | 97.0588 | 96.4912 | 97.6331 | 95.1156 | 165 | 6 | 165 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.0588 | 94.2857 | 100.0000 | 65.3527 | 165 | 10 | 167 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | het | 75.0365 | 79.3269 | 71.1864 | 85.5155 | 165 | 43 | 126 | 51 | 51 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 75.9608 | 97.6331 | 62.1622 | 84.2553 | 165 | 4 | 69 | 42 | 41 | 97.6190 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | * | 69.8453 | 62.5000 | 79.1469 | 85.8199 | 165 | 99 | 167 | 44 | 27 | 61.3636 | |
| ckim-isaac | INDEL | * | map_l250_m2_e0 | * | 66.1323 | 49.8489 | 98.2143 | 97.1370 | 165 | 166 | 165 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | * | 95.0825 | 96.4912 | 93.7143 | 95.4967 | 165 | 6 | 164 | 11 | 2 | 18.1818 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.0638 | 0.0000 | 0.0000 | 164 | 15253 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | homalt | 83.1300 | 71.9298 | 98.4615 | 91.6560 | 164 | 64 | 192 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e1 | * | 65.5947 | 59.6364 | 72.8758 | 83.1683 | 164 | 111 | 223 | 83 | 59 | 71.0843 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m0_e0 | * | 87.1622 | 93.1818 | 81.8731 | 92.8122 | 164 | 12 | 271 | 60 | 15 | 25.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0725 | 92.1348 | 98.2036 | 67.3828 | 164 | 14 | 164 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.7552 | 93.7143 | 100.0000 | 65.3445 | 164 | 11 | 166 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 65.1883 | 81.5920 | 54.2763 | 83.4962 | 164 | 37 | 165 | 139 | 136 | 97.8417 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3116 | 97.6190 | 97.0060 | 78.0552 | 164 | 4 | 162 | 5 | 2 | 40.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | * | 76.1021 | 62.1212 | 98.2036 | 94.2215 | 164 | 100 | 164 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | * | 83.0171 | 95.9064 | 73.1818 | 95.4081 | 164 | 7 | 161 | 59 | 4 | 6.7797 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0725 | 92.1348 | 98.2036 | 72.2591 | 164 | 14 | 164 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 89.6323 | 85.4167 | 94.2857 | 93.1800 | 164 | 28 | 165 | 10 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 84.0573 | 78.4689 | 90.5028 | 57.9812 | 164 | 45 | 162 | 17 | 12 | 70.5882 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 91.1111 | 85.4167 | 97.6190 | 27.2727 | 164 | 28 | 164 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | * | 90.5970 | 85.8639 | 95.8824 | 90.7053 | 164 | 27 | 163 | 7 | 6 | 85.7143 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 82.8549 | 77.7251 | 88.7097 | 61.5702 | 164 | 47 | 165 | 21 | 20 | 95.2381 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1963 | 97.6190 | 98.7805 | 79.4486 | 164 | 4 | 162 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0725 | 92.1348 | 98.2036 | 72.7124 | 164 | 14 | 164 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 96.1877 | 95.9064 | 96.4706 | 94.3428 | 164 | 7 | 164 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8996 | 97.6190 | 98.1818 | 75.6637 | 164 | 4 | 162 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.7241 | 97.0414 | 53.2000 | 69.5122 | 164 | 5 | 133 | 117 | 117 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.7674 | 91.5730 | 98.1928 | 70.8260 | 163 | 15 | 163 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | homalt | 98.7879 | 99.3902 | 98.1928 | 89.9819 | 163 | 1 | 163 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m0_e0 | homalt | 98.4894 | 99.3902 | 97.6048 | 89.0921 | 163 | 1 | 163 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | * | 66.9120 | 61.7424 | 73.0263 | 82.9213 | 163 | 101 | 222 | 82 | 58 | 70.7317 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 82.0654 | 92.0904 | 74.0088 | 72.2494 | 163 | 14 | 168 | 59 | 57 | 96.6102 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 18.1575 | 16.2675 | 20.5446 | 86.8404 | 163 | 839 | 166 | 642 | 34 | 5.2960 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e1 | homalt | 86.2888 | 79.9020 | 93.7853 | 93.0913 | 163 | 41 | 166 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.6798 | 94.7674 | 62.9921 | 72.8632 | 163 | 9 | 160 | 94 | 2 | 2.1277 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | * | 96.4497 | 95.3216 | 97.6048 | 94.7698 | 163 | 8 | 163 | 4 | 2 | 50.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.1012 | 99.3902 | 94.9153 | 88.6973 | 163 | 1 | 112 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0437 | 91.5730 | 98.7879 | 71.6007 | 163 | 15 | 163 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.7879 | 99.3902 | 98.1928 | 91.6917 | 163 | 1 | 163 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4462 | 99.3902 | 91.8033 | 88.0275 | 163 | 1 | 112 | 10 | 8 | 80.0000 | |