PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29551-29600 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | het | 94.6019 | 92.1053 | 97.2376 | 95.3423 | 175 | 15 | 176 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 53.9291 | 37.2340 | 97.7654 | 86.7506 | 175 | 295 | 175 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.6433 | 91.1458 | 86.2745 | 46.1741 | 175 | 17 | 176 | 28 | 19 | 67.8571 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 84.7458 | 91.1458 | 79.1855 | 59.0741 | 175 | 17 | 175 | 46 | 43 | 93.4783 | |
| mlin-fermikit | INDEL | * | map_l125_m0_e0 | homalt | 64.5756 | 61.6197 | 67.8295 | 81.8820 | 175 | 109 | 175 | 83 | 68 | 81.9277 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e1 | * | 92.5926 | 94.5946 | 90.6736 | 97.1634 | 175 | 10 | 175 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4318 | 98.8701 | 100.0000 | 74.3402 | 175 | 2 | 175 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9529 | 94.0860 | 100.0000 | 69.8795 | 175 | 11 | 175 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4318 | 98.8701 | 100.0000 | 74.3777 | 175 | 2 | 175 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6851 | 94.0860 | 99.4318 | 71.1475 | 175 | 11 | 175 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1501 | 98.3146 | 100.0000 | 81.2834 | 175 | 3 | 175 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4318 | 98.8701 | 100.0000 | 74.3402 | 175 | 2 | 175 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9529 | 94.0860 | 100.0000 | 69.8795 | 175 | 11 | 175 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1501 | 98.8701 | 99.4318 | 73.9645 | 175 | 2 | 175 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9529 | 94.0860 | 100.0000 | 70.5882 | 175 | 11 | 175 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | * | 87.0647 | 94.5946 | 80.6452 | 96.4327 | 175 | 10 | 175 | 42 | 4 | 9.5238 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | * | 97.2222 | 95.1087 | 99.4318 | 94.0999 | 175 | 9 | 175 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1501 | 98.3146 | 100.0000 | 80.6416 | 175 | 3 | 175 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4318 | 98.8701 | 100.0000 | 74.0356 | 175 | 2 | 175 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4318 | 98.8701 | 100.0000 | 74.1124 | 175 | 2 | 175 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6851 | 94.0860 | 99.4318 | 71.0526 | 175 | 11 | 175 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 59.4656 | 87.5000 | 45.0363 | 57.4665 | 175 | 25 | 186 | 227 | 205 | 90.3084 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | het | 83.9329 | 83.3333 | 84.5411 | 97.4454 | 175 | 35 | 175 | 32 | 3 | 9.3750 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | het | 83.7321 | 82.9384 | 84.5411 | 97.5144 | 175 | 36 | 175 | 32 | 3 | 9.3750 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3989 | 93.5484 | 99.4286 | 70.8333 | 174 | 12 | 174 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e0 | * | 92.5532 | 94.5652 | 90.6250 | 97.1080 | 174 | 10 | 174 | 18 | 1 | 5.5556 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 87.4670 | 80.5556 | 95.6757 | 56.8765 | 174 | 42 | 177 | 8 | 7 | 87.5000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m1_e0 | het | 73.4177 | 58.1940 | 99.4286 | 96.2382 | 174 | 125 | 174 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 60.3108 | 43.3915 | 98.8571 | 88.9937 | 174 | 227 | 173 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8636 | 97.7528 | 100.0000 | 79.2115 | 174 | 4 | 174 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1453 | 98.3051 | 100.0000 | 74.5985 | 174 | 3 | 174 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.4034 | 93.5484 | 99.4382 | 67.4589 | 174 | 12 | 177 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | homalt | 50.6550 | 39.9083 | 69.3227 | 79.0659 | 174 | 262 | 174 | 77 | 71 | 92.2078 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e1 | * | 96.9359 | 94.0541 | 100.0000 | 91.6547 | 174 | 11 | 175 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3146 | 98.3051 | 98.3240 | 64.3426 | 174 | 3 | 176 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1445 | 93.5484 | 98.8889 | 67.7996 | 174 | 12 | 178 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.0282 | 97.7528 | 98.3051 | 80.7818 | 174 | 4 | 174 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 87.0000 | 94.5652 | 80.5556 | 96.3624 | 174 | 10 | 174 | 42 | 4 | 9.5238 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.7429 | 20.8134 | 37.3970 | 59.0695 | 174 | 662 | 227 | 380 | 217 | 57.1053 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 45.8495 | 29.7945 | 99.4253 | 32.5581 | 174 | 410 | 173 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 34.5477 | 35.3061 | 33.8212 | 42.2578 | 173 | 317 | 647 | 1266 | 1039 | 82.0695 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 26.6154 | 0.0000 | 0.0000 | 173 | 477 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 52.0117 | 48.8701 | 55.5851 | 61.8274 | 173 | 181 | 209 | 167 | 115 | 68.8623 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | * | 75.6012 | 62.9091 | 94.7090 | 81.7919 | 173 | 102 | 179 | 10 | 9 | 90.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | het | 94.2838 | 90.1042 | 98.8701 | 76.9531 | 173 | 19 | 175 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.2955 | 97.1910 | 99.4253 | 81.4499 | 173 | 5 | 173 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 64.5522 | 47.6584 | 100.0000 | 63.8075 | 173 | 190 | 173 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l250_m0_e0 | homalt | 43.1421 | 27.5040 | 100.0000 | 97.6903 | 173 | 456 | 173 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.3078 | 82.7751 | 90.1554 | 73.0070 | 173 | 36 | 174 | 19 | 12 | 63.1579 | |
| anovak-vg | INDEL | D1_5 | map_l150_m1_e0 | homalt | 85.0123 | 75.8772 | 96.6480 | 88.9370 | 173 | 55 | 173 | 6 | 5 | 83.3333 | |