PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29401-29450 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 94.0580 | 94.2708 | 93.8462 | 89.3033 | 181 | 11 | 183 | 12 | 2 | 16.6667 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 92.1120 | 98.3696 | 86.6029 | 96.8600 | 181 | 3 | 181 | 28 | 1 | 3.5714 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | het | 94.5170 | 94.2708 | 94.7644 | 90.7191 | 181 | 11 | 181 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 97.8378 | 98.3696 | 97.3118 | 96.0180 | 181 | 3 | 181 | 5 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | het | 95.5145 | 95.2632 | 95.7672 | 95.8815 | 181 | 9 | 181 | 8 | 2 | 25.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 90.2743 | 98.3696 | 83.4101 | 96.5457 | 181 | 3 | 181 | 36 | 1 | 2.7778 | |
| hfeng-pmm3 | INDEL | D6_15 | segdup | * | 97.0509 | 94.7644 | 99.4505 | 92.8823 | 181 | 10 | 181 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | segdup | * | 96.5333 | 94.7644 | 98.3696 | 93.4752 | 181 | 10 | 181 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | homalt | 96.2766 | 93.7824 | 98.9071 | 92.7981 | 181 | 12 | 181 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 39.0307 | 30.0166 | 55.7823 | 32.5275 | 181 | 422 | 1230 | 975 | 826 | 84.7179 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.2949 | 87.8641 | 97.1963 | 87.9301 | 181 | 25 | 208 | 6 | 3 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 96.2766 | 98.3696 | 94.2708 | 95.7248 | 181 | 3 | 181 | 11 | 1 | 9.0909 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.3984 | 76.3713 | 99.4565 | 26.6932 | 181 | 56 | 183 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.8106 | 91.8782 | 82.2727 | 58.6466 | 181 | 16 | 181 | 39 | 37 | 94.8718 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | het | 95.2632 | 95.2632 | 95.2632 | 95.6049 | 181 | 9 | 181 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 83.4101 | 90.0498 | 77.6824 | 80.0684 | 181 | 20 | 181 | 52 | 41 | 78.8462 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.7525 | 64.8746 | 97.0093 | 45.7404 | 181 | 98 | 519 | 16 | 13 | 81.2500 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e0 | het | 92.1221 | 86.1905 | 98.9305 | 91.5385 | 181 | 29 | 185 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 71.4004 | 63.9576 | 80.8036 | 71.2821 | 181 | 102 | 181 | 43 | 31 | 72.0930 | |
| jpowers-varprowl | SNP | tv | map_l250_m0_e0 | homalt | 95.7672 | 93.7824 | 97.8378 | 95.4944 | 181 | 12 | 181 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 93.5065 | 97.2973 | 90.0000 | 97.0803 | 180 | 5 | 180 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.8022 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 97.0350 | 97.2973 | 96.7742 | 95.1360 | 180 | 5 | 180 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | I1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 32.8358 | 180 | 0 | 180 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | het | 93.9975 | 89.1089 | 99.4536 | 79.7790 | 180 | 22 | 182 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | segdup | * | 96.5000 | 94.2408 | 98.8701 | 91.4327 | 180 | 11 | 175 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 25.9259 | 180 | 0 | 180 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | segdup | * | 96.0000 | 94.2408 | 97.8261 | 92.8377 | 180 | 11 | 180 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I1_5 | func_cds | * | 97.5741 | 100.0000 | 95.2632 | 47.6584 | 180 | 0 | 181 | 9 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | func_cds | * | 98.6301 | 100.0000 | 97.2973 | 39.7394 | 180 | 0 | 180 | 5 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 94.6948 | 97.2973 | 92.2280 | 94.7767 | 180 | 5 | 178 | 15 | 1 | 6.6667 | |
| ckim-gatk | INDEL | I1_5 | func_cds | * | 99.1781 | 100.0000 | 98.3696 | 47.7273 | 180 | 0 | 181 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 84.5989 | 77.2532 | 93.4884 | 70.0139 | 180 | 53 | 201 | 14 | 12 | 85.7143 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | * | 67.6145 | 65.4545 | 69.9219 | 89.0552 | 180 | 95 | 179 | 77 | 71 | 92.2078 | |
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | homalt | 95.4907 | 93.2642 | 97.8261 | 94.7020 | 180 | 13 | 180 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | * | 80.1166 | 97.8261 | 67.8363 | 95.0015 | 180 | 4 | 232 | 110 | 18 | 16.3636 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 40.1458 | 27.7350 | 72.6592 | 88.8238 | 180 | 469 | 194 | 73 | 28 | 38.3562 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | * | 97.0156 | 97.8261 | 96.2185 | 95.0365 | 180 | 4 | 229 | 9 | 4 | 44.4444 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e0 | homalt | 69.0979 | 52.7859 | 100.0000 | 91.8846 | 180 | 161 | 180 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | * | 38.0148 | 23.5294 | 98.9011 | 99.0675 | 180 | 585 | 180 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | * | 97.8261 | 97.2973 | 98.3607 | 95.4602 | 180 | 5 | 180 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | func_cds | het | 91.1392 | 84.1121 | 99.4475 | 61.8143 | 180 | 34 | 180 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 35.1064 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | func_cds | * | 99.4475 | 100.0000 | 98.9011 | 32.0896 | 180 | 0 | 180 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 47.8632 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | func_cds | * | 99.7230 | 100.0000 | 99.4475 | 26.7206 | 180 | 0 | 180 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | func_cds | * | 99.4475 | 100.0000 | 98.9011 | 31.8352 | 180 | 0 | 180 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.3930 | 81.0811 | 81.7073 | 53.8028 | 180 | 42 | 268 | 60 | 33 | 55.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | * | 98.0926 | 97.2973 | 98.9011 | 95.4850 | 180 | 5 | 180 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |