PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29351-29400 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | * | 98.1233 | 98.9189 | 97.3404 | 94.5285 | 183 | 2 | 183 | 5 | 1 | 20.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e0 | * | 97.6000 | 99.4565 | 95.8115 | 95.6223 | 183 | 1 | 183 | 8 | 1 | 12.5000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 96.8296 | 95.3125 | 98.3957 | 90.5793 | 183 | 9 | 184 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | homalt | 84.2502 | 73.7903 | 98.1651 | 91.8045 | 183 | 65 | 214 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 24.3587 | 15.4953 | 56.9132 | 61.6995 | 183 | 998 | 177 | 134 | 97 | 72.3881 | |
| gduggal-snapvard | SNP | tv | map_l250_m0_e0 | homalt | 96.8254 | 94.8187 | 98.9189 | 93.7500 | 183 | 10 | 183 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | het | 85.3147 | 96.3158 | 76.5690 | 97.3834 | 183 | 7 | 183 | 56 | 10 | 17.8571 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.1262 | 97.3404 | 98.9247 | 61.8070 | 183 | 5 | 184 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | segdup | * | 96.0630 | 95.8115 | 96.3158 | 95.0955 | 183 | 8 | 183 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | het | 96.2782 | 96.3158 | 96.2406 | 94.6853 | 183 | 7 | 256 | 10 | 4 | 40.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.8085 | 94.7917 | 98.9130 | 40.4531 | 182 | 10 | 182 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | het | 95.2880 | 95.7895 | 94.7917 | 96.7022 | 182 | 8 | 182 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 97.8495 | 98.3784 | 97.3262 | 96.0887 | 182 | 3 | 182 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | * | 98.1132 | 98.9130 | 97.3262 | 94.4329 | 182 | 2 | 182 | 5 | 1 | 20.0000 | |
| jlack-gatk | INDEL | * | map_l250_m1_e0 | het | 85.8491 | 95.7895 | 77.7778 | 97.3448 | 182 | 8 | 182 | 52 | 1 | 1.9231 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 90.3226 | 98.3784 | 83.4862 | 96.6186 | 182 | 3 | 182 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | D6_15 | segdup | * | 92.8571 | 95.2880 | 90.5473 | 94.7561 | 182 | 9 | 182 | 19 | 5 | 26.3158 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 92.1519 | 98.3784 | 86.6667 | 96.9213 | 182 | 3 | 182 | 28 | 1 | 3.5714 | |
| ckim-dragen | INDEL | D6_15 | segdup | * | 95.2880 | 95.2880 | 95.2880 | 94.6959 | 182 | 9 | 182 | 9 | 5 | 55.5556 | |
| cchapple-custom | SNP | tv | map_l250_m0_e0 | homalt | 97.0667 | 94.3005 | 100.0000 | 91.7009 | 182 | 11 | 182 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | segdup | * | 96.2963 | 95.2880 | 97.3262 | 92.9726 | 182 | 9 | 182 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | * | func_cds | het | 88.4234 | 85.0467 | 92.0792 | 43.5754 | 182 | 32 | 186 | 16 | 10 | 62.5000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 65.3479 | 50.1377 | 93.8053 | 47.9263 | 182 | 181 | 106 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 19.0780 | 10.6557 | 91.0204 | 63.7574 | 182 | 1526 | 223 | 22 | 20 | 90.9091 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 80.5715 | 75.2066 | 86.7606 | 55.0063 | 182 | 60 | 308 | 47 | 45 | 95.7447 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 54.0780 | 37.2951 | 98.3240 | 67.3953 | 182 | 306 | 176 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e1 | * | 67.9623 | 66.1818 | 69.8413 | 89.4073 | 182 | 93 | 176 | 76 | 63 | 82.8947 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 55.3614 | 47.3958 | 66.5455 | 70.9916 | 182 | 202 | 183 | 92 | 89 | 96.7391 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 68.4814 | 53.3724 | 95.5224 | 60.9709 | 182 | 159 | 192 | 9 | 8 | 88.8889 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | het | 92.1619 | 86.2559 | 98.9362 | 91.7616 | 182 | 29 | 186 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | segdup | * | 96.8085 | 95.2880 | 98.3784 | 93.0582 | 182 | 9 | 182 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | het | 90.5473 | 95.7895 | 85.8491 | 97.7177 | 182 | 8 | 182 | 30 | 2 | 6.6667 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | * | 95.0392 | 95.2880 | 94.7917 | 95.0541 | 182 | 9 | 182 | 10 | 4 | 40.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 96.2963 | 98.3784 | 94.3005 | 95.8016 | 182 | 3 | 182 | 11 | 1 | 9.0909 | |
| anovak-vg | INDEL | I1_5 | map_l125_m0_e0 | * | 57.2924 | 58.7097 | 55.9420 | 90.7507 | 182 | 128 | 193 | 152 | 98 | 64.4737 | |
| astatham-gatk | INDEL | * | map_l250_m1_e0 | het | 93.5733 | 95.7895 | 91.4573 | 96.4356 | 182 | 8 | 182 | 17 | 2 | 11.7647 | |
| bgallagher-sentieon | INDEL | D6_15 | segdup | * | 95.2880 | 95.2880 | 95.2880 | 93.7724 | 182 | 9 | 182 | 9 | 5 | 55.5556 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 35.8318 | 82.3529 | 22.8972 | 89.5355 | 182 | 39 | 196 | 660 | 17 | 2.5758 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | * | 80.0482 | 97.8378 | 67.7326 | 95.1053 | 181 | 4 | 233 | 111 | 18 | 16.2162 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m1_e0 | homalt | 94.7873 | 91.4141 | 98.4190 | 82.4913 | 181 | 17 | 249 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.7554 | 24.6259 | 29.2880 | 56.6011 | 181 | 554 | 181 | 437 | 436 | 99.7712 | |
| gduggal-snapfb | SNP | tv | map_l250_m0_e0 | homalt | 94.7644 | 93.7824 | 95.7672 | 97.4314 | 181 | 12 | 181 | 8 | 3 | 37.5000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 71.8309 | 57.2785 | 96.2963 | 83.2149 | 181 | 135 | 182 | 7 | 5 | 71.4286 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 70.9804 | 63.9576 | 79.7357 | 72.0099 | 181 | 102 | 181 | 46 | 33 | 71.7391 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | homalt | 69.0840 | 52.7697 | 100.0000 | 91.9982 | 181 | 162 | 181 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 67.9174 | 51.7143 | 98.9071 | 58.0275 | 181 | 169 | 181 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.3469 | 85.7820 | 100.0000 | 39.8671 | 181 | 30 | 181 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 51.7864 | 37.7083 | 82.6389 | 69.0323 | 181 | 299 | 119 | 25 | 25 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | * | 97.0374 | 97.8378 | 96.2500 | 95.1120 | 181 | 4 | 231 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 88.8955 | 90.5000 | 87.3469 | 59.7701 | 181 | 19 | 214 | 31 | 31 | 100.0000 | |