PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
2851-2900 / 86044 show all
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.8726
86.3602
87.3912
57.0498
2712442842720439253577
91.1338
ckim-isaacSNP*segdup*
98.2480
96.6046
99.9484
87.4705
2711495327116147
50.0000
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.4986
87.0629
98.6582
85.3332
27114402927131369118
31.9783
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.4986
87.0629
98.6582
85.3332
27114402927131369118
31.9783
cchapple-customSNP*map_l100_m2_e1homalt
98.7359
97.5104
99.9926
58.6714
271046922709322
100.0000
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
85.3685
84.7087
86.0387
70.3107
2710048922762144824002
89.2905
mlin-fermikitSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1160
97.8900
98.3429
64.4756
2709458427122457344
75.2735
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
96.4342
95.8599
97.0154
57.1729
27090117027077833772
92.6771
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
85.2884
84.6243
85.9630
70.3947
2707349192745444834096
91.3674
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_diTR_11to50*
83.5750
73.9861
96.0194
60.2412
270739519270651122616
54.9020
gduggal-bwavardSNP*map_l100_m2_e1homalt
98.6017
97.3521
99.8837
62.7989
27060736266313125
80.6452
anovak-vgSNPtimap_l100_m1_e0het
80.6718
90.3580
72.8613
71.8309
2705528872684599992187
21.8722
gduggal-snapplatSNPtimap_l125_m1_e0*
94.1774
92.2277
96.2113
79.7747
270552280270701066586
54.9719
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.9809
86.1182
87.8610
55.6334
2704843602713537493406
90.8509
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.9809
86.1182
87.8610
55.6334
2704843602713537493406
90.8509
anovak-vgSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.7089
96.7345
94.7048
54.9593
27046913278291556769
49.4216
ckim-gatkSNPtimap_l100_m2_e0het
92.8437
88.2960
97.8852
81.4673
2703835842703158462
10.6164
gduggal-snapfbSNP*map_l100_m2_e1homalt
98.4483
97.2334
99.6939
70.5179
27027769270298330
36.1446
dgrover-gatkINDEL*HG002complexvarhomalt
99.7765
99.9223
99.6312
57.3581
27006212701610096
96.0000
bgallagher-sentieonINDEL*HG002complexvarhomalt
99.7010
99.9186
99.4844
57.3638
270052227015140135
96.4286
raldana-dualsentieonINDEL*HG002compoundhet*
92.3506
90.1368
94.6759
61.0439
2700529552688715121502
99.3386
astatham-gatkINDEL*HG002complexvarhomalt
99.7747
99.9075
99.6422
57.3610
2700225270129794
96.9072
raldana-dualsentieonINDEL*HG002complexvarhomalt
99.7249
99.9038
99.5467
56.9673
270012627010123119
96.7480
jli-customINDEL*HG002complexvarhomalt
99.8318
99.8964
99.7673
56.4104
2699928270076357
90.4762
ckim-gatkINDEL*HG002complexvarhomalt
99.7525
99.8890
99.6164
57.3371
26997302701010499
95.1923
jmaeng-gatkINDEL*HG002complexvarhomalt
99.7212
99.8779
99.5650
57.3567
269943327007118111
94.0678
ckim-vqsrINDEL*HG002complexvarhomalt
99.7470
99.8705
99.6237
57.3434
26992352700510298
96.0784
hfeng-pmm3INDEL*HG002complexvarhomalt
99.7967
99.8594
99.7340
55.8371
2698938269997266
91.6667
hfeng-pmm2INDEL*HG002complexvarhomalt
99.7542
99.8483
99.6603
56.1296
2698641269949286
93.4783
jmaeng-gatkSNPtimap_l100_m2_e0het
92.7126
88.1229
97.8066
81.8391
2698536372697860556
9.2562
hfeng-pmm1INDEL*HG002complexvarhomalt
99.7782
99.8372
99.7192
55.9241
2698344269917670
92.1053
jlack-gatkINDEL*HG002complexvarhomalt
99.5756
99.8076
99.3448
56.8540
269755226988178171
96.0674
ckim-dragenINDEL*HG002complexvarhomalt
99.5434
99.8039
99.2843
57.4048
269745326911194188
96.9072
hfeng-pmm2SNP*map_l100_m1_e0homalt
99.8648
99.8704
99.8593
60.9853
2696835269683819
50.0000
gduggal-bwaplatSNP*map_l125_m1_e0*
74.4387
59.4965
99.4030
86.9422
26968183592697516246
28.3951
eyeh-varpipeSNP*map_l100_m1_e0homalt
99.8701
99.8556
99.8846
63.0607
2696439259623016
53.3333
hfeng-pmm1SNP*map_l100_m1_e0homalt
99.8556
99.8408
99.8703
60.9594
2696043269603517
48.5714
hfeng-pmm3SNP*map_l100_m1_e0homalt
99.8518
99.8334
99.8703
60.8633
2695845269583517
48.5714
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
89.4833
97.3914
82.7630
66.8151
26956722270135626378
6.7188
egarrison-hhgaSNP*map_l100_m1_e0homalt
99.8480
99.7630
99.9332
60.8894
2693964269391817
94.4444
gduggal-bwavardSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.6687
97.3228
98.0171
65.4411
2693774126644539197
36.5492
ltrigg-rtg1SNP*map_l100_m1_e0homalt
99.8221
99.7445
99.8999
60.0030
2693469269332724
88.8889
raldana-dualsentieonSNP*map_l100_m1_e0homalt
99.8258
99.7223
99.9295
56.9722
2692875269281915
78.9474
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
76.7889
93.7761
65.0122
76.1162
2692517872721814648266
1.8160
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
76.7889
93.7761
65.0122
76.1162
2692517872721814648266
1.8160
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.4923
97.2577
95.7388
64.3143
26919759275901228588
47.8827
ltrigg-rtg2SNP*map_l100_m1_e0homalt
99.8127
99.6852
99.9406
57.7080
2691885269161614
87.5000
astatham-gatkSNP*map_l150_m2_e0*
91.4701
84.5033
99.6888
80.0769
269164936269108440
47.6190
bgallagher-sentieonSNP*map_l100_m1_e0homalt
99.7886
99.6630
99.9146
57.7258
2691291269122318
78.2609
ndellapenna-hhgaSNP*map_l100_m1_e0homalt
99.7849
99.6482
99.9220
59.8338
2690895269082119
90.4762