PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27601-27650 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D6_15 | map_siren | het | 98.5599 | 97.8571 | 99.2727 | 84.3483 | 274 | 6 | 273 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_siren | het | 96.9741 | 97.5000 | 96.4539 | 89.3222 | 273 | 7 | 272 | 10 | 2 | 20.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002complexvar | homalt | 84.2050 | 94.4637 | 75.9563 | 78.1493 | 273 | 16 | 278 | 88 | 85 | 96.5909 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002complexvar | homalt | 96.9739 | 94.4637 | 99.6212 | 60.8309 | 273 | 16 | 263 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_siren | het | 97.4910 | 97.5000 | 97.4820 | 79.8988 | 273 | 7 | 271 | 7 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2068 | 78.9017 | 100.0000 | 60.9898 | 273 | 73 | 268 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 79.4760 | 66.4234 | 98.9130 | 80.7799 | 273 | 138 | 273 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | het | 95.1158 | 91.3043 | 99.2593 | 81.1453 | 273 | 26 | 268 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | het | 97.8430 | 97.5000 | 98.1884 | 80.0145 | 273 | 7 | 271 | 5 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_siren | het | 97.8495 | 97.5000 | 98.2014 | 83.8184 | 273 | 7 | 273 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2478 | 94.4444 | 94.0520 | 77.1259 | 272 | 16 | 253 | 16 | 12 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m1_e0 | het | 92.6746 | 90.9699 | 94.4444 | 91.6035 | 272 | 27 | 272 | 16 | 9 | 56.2500 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 94.4444 | 94.1176 | 94.7735 | 91.6932 | 272 | 17 | 272 | 15 | 6 | 40.0000 | |
| ckim-isaac | SNP | * | HG002complexvar | hetalt | 93.4708 | 87.7419 | 100.0000 | 29.5337 | 272 | 38 | 272 | 0 | 0 | ||
| ckim-isaac | SNP | tv | HG002complexvar | hetalt | 93.4708 | 87.7419 | 100.0000 | 29.5337 | 272 | 38 | 272 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 95.1049 | 0.0000 | 0.0000 | 272 | 14 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_siren | het | 92.5170 | 97.1429 | 88.3117 | 88.1992 | 272 | 8 | 272 | 36 | 3 | 8.3333 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.6667 | 82.9268 | 100.0000 | 53.4653 | 272 | 56 | 47 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 87.4562 | 79.3003 | 97.4820 | 62.2795 | 272 | 71 | 271 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | INDEL | I1_5 | HG002compoundhet | homalt | 78.8406 | 82.6748 | 75.3463 | 87.5988 | 272 | 57 | 272 | 89 | 78 | 87.6404 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 65.0184 | 70.8333 | 60.0858 | 84.4511 | 272 | 112 | 280 | 186 | 100 | 53.7634 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.0890 | 20.6844 | 39.2387 | 39.7707 | 272 | 1043 | 268 | 415 | 363 | 87.4699 | |
| astatham-gatk | INDEL | D6_15 | map_siren | het | 96.6183 | 97.1429 | 96.0993 | 87.5935 | 272 | 8 | 271 | 11 | 2 | 18.1818 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | homalt | 84.2511 | 94.1176 | 76.2570 | 66.9437 | 272 | 17 | 273 | 85 | 60 | 70.5882 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | * | 96.2737 | 93.7716 | 98.9130 | 83.8123 | 271 | 18 | 273 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | homalt | 73.6413 | 72.8495 | 74.4505 | 79.6193 | 271 | 101 | 271 | 93 | 87 | 93.5484 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9736 | 94.7552 | 99.2982 | 55.3292 | 271 | 15 | 283 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.4820 | 98.1884 | 96.7857 | 90.8765 | 271 | 5 | 271 | 9 | 4 | 44.4444 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | homalt | 86.8336 | 77.6504 | 98.4802 | 88.9449 | 271 | 78 | 324 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 22.7672 | 17.5860 | 32.2767 | 75.3288 | 271 | 1270 | 224 | 470 | 9 | 1.9149 | |
| ckim-isaac | INDEL | D6_15 | map_siren | * | 68.4305 | 53.2417 | 95.7447 | 78.2743 | 271 | 238 | 270 | 12 | 10 | 83.3333 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.3433 | 50.9434 | 99.3151 | 42.0635 | 270 | 260 | 290 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.0034 | 74.5856 | 75.4258 | 72.2485 | 270 | 92 | 310 | 101 | 98 | 97.0297 | |
| rpoplin-dv42 | INDEL | D6_15 | map_siren | het | 96.0854 | 96.4286 | 95.7447 | 85.9911 | 270 | 10 | 270 | 12 | 5 | 41.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | het | 97.4729 | 96.4286 | 98.5401 | 83.9390 | 270 | 10 | 270 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.6492 | 95.4064 | 100.0000 | 61.3043 | 270 | 13 | 267 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l250_m1_e0 | * | 90.7563 | 88.5246 | 93.1034 | 96.3179 | 270 | 35 | 270 | 20 | 12 | 60.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7901 | 94.4056 | 99.2982 | 51.6949 | 270 | 16 | 283 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.9898 | 93.7500 | 94.2308 | 79.6557 | 270 | 18 | 245 | 15 | 9 | 60.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 91.7090 | 85.4430 | 98.9667 | 76.0780 | 270 | 46 | 862 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 46.1659 | 40.4511 | 53.7611 | 64.5212 | 269 | 396 | 243 | 209 | 202 | 96.6507 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e0 | * | 68.1876 | 51.8304 | 99.6296 | 96.3966 | 269 | 250 | 269 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8145 | 99.6296 | 100.0000 | 55.7214 | 269 | 1 | 267 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | HG002complexvar | homalt | 89.7501 | 87.0550 | 92.6174 | 71.3186 | 269 | 40 | 276 | 22 | 21 | 95.4545 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8145 | 99.6296 | 100.0000 | 64.7757 | 269 | 1 | 267 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.6407 | 97.4638 | 97.8182 | 91.2809 | 269 | 7 | 269 | 6 | 4 | 66.6667 | |
| ckim-isaac | SNP | tv | map_l250_m0_e0 | het | 63.7441 | 47.0280 | 98.8971 | 94.7702 | 269 | 303 | 269 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8145 | 99.6296 | 100.0000 | 63.3242 | 269 | 1 | 267 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6282 | 99.6296 | 99.6269 | 64.6904 | 269 | 1 | 267 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 61.4131 | 61.8391 | 60.9929 | 85.1344 | 269 | 166 | 344 | 220 | 13 | 5.9091 | |