PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27051-27100 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.2500 | 99.0354 | 93.6170 | 69.7610 | 308 | 3 | 308 | 21 | 20 | 95.2381 | |
| hfeng-pmm2 | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 39.9610 | 308 | 2 | 308 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e1 | het | 97.7828 | 97.1609 | 98.4127 | 89.5937 | 308 | 9 | 310 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.8033 | 84.8485 | 100.0000 | 47.2906 | 308 | 55 | 321 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 37.5254 | 308 | 2 | 308 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 37.5254 | 308 | 2 | 308 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 39.9610 | 308 | 2 | 308 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 39.1304 | 308 | 2 | 308 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 39.1304 | 308 | 2 | 308 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.1422 | 93.3333 | 73.3475 | 65.0261 | 308 | 22 | 344 | 125 | 113 | 90.4000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002compoundhet | homalt | 92.8474 | 93.6170 | 92.0904 | 71.4055 | 308 | 21 | 326 | 28 | 27 | 96.4286 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.2886 | 97.4684 | 99.1228 | 83.5498 | 308 | 8 | 339 | 3 | 3 | 100.0000 | |
| astatham-gatk | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l125_m1_e0 | homalt | 68.2142 | 94.1896 | 53.4687 | 80.5464 | 308 | 19 | 316 | 275 | 253 | 92.0000 | |
| anovak-vg | SNP | ti | map_l250_m0_e0 | homalt | 82.3486 | 70.6422 | 98.7055 | 93.2724 | 308 | 128 | 305 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.0079 | 94.1896 | 100.0000 | 84.1944 | 308 | 19 | 309 | 0 | 0 | ||
| astatham-gatk | SNP | tv | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 35.9667 | 308 | 2 | 308 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3979 | 97.1519 | 99.6764 | 72.8471 | 307 | 9 | 308 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e0 | homalt | 29.8638 | 17.5529 | 100.0000 | 97.3580 | 307 | 1442 | 307 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 89.7661 | 88.9855 | 90.5605 | 92.0254 | 307 | 38 | 307 | 32 | 1 | 3.1250 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | het | 47.7657 | 37.9012 | 64.5714 | 90.0794 | 307 | 503 | 339 | 186 | 31 | 16.6667 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3979 | 97.1519 | 99.6764 | 72.8471 | 307 | 9 | 308 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | tv | map_l250_m1_e0 | homalt | 52.7945 | 35.8645 | 100.0000 | 85.4226 | 307 | 549 | 307 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.4772 | 76.5586 | 84.8185 | 64.9306 | 307 | 94 | 257 | 46 | 29 | 63.0435 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 93.5976 | 0.0000 | 0.0000 | 307 | 21 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 81.9169 | 82.5269 | 81.3158 | 86.8147 | 307 | 65 | 309 | 71 | 59 | 83.0986 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 98.0831 | 0.0000 | 0.0000 | 307 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | HG002complexvar | hetalt | 0.0000 | 99.0323 | 0.0000 | 0.0000 | 307 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | HG002complexvar | hetalt | 0.0000 | 99.0323 | 0.0000 | 0.0000 | 307 | 3 | 0 | 0 | 0 | ||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 31.2957 | 79.5337 | 19.4805 | 82.5076 | 307 | 79 | 315 | 1302 | 53 | 4.0707 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.6386 | 91.6418 | 100.0000 | 68.0583 | 307 | 28 | 329 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.6139 | 90.0293 | 99.6904 | 56.8182 | 307 | 34 | 322 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.6418 | 84.5730 | 100.0000 | 45.2055 | 307 | 56 | 320 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | HG002complexvar | hetalt | 99.5138 | 99.0323 | 100.0000 | 35.3684 | 307 | 3 | 307 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | HG002complexvar | hetalt | 99.5138 | 99.0323 | 100.0000 | 35.3684 | 307 | 3 | 307 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.3056 | 69.9317 | 100.0000 | 33.4008 | 307 | 132 | 329 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | het | 68.5268 | 52.2998 | 99.3528 | 96.8009 | 307 | 280 | 307 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.1567 | 70.5747 | 92.7492 | 83.3752 | 307 | 128 | 307 | 24 | 4 | 16.6667 | |
| ltrigg-rtg1 | SNP | * | HG002complexvar | hetalt | 98.8749 | 99.0323 | 98.7179 | 36.8421 | 307 | 3 | 308 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | HG002complexvar | hetalt | 98.8749 | 99.0323 | 98.7179 | 36.8421 | 307 | 3 | 308 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.5486 | 84.8066 | 97.1246 | 70.0192 | 307 | 55 | 304 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m0_e0 | het | 96.3873 | 94.1718 | 98.7097 | 75.2988 | 307 | 19 | 306 | 4 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 71.4933 | 61.7706 | 84.8485 | 75.6702 | 307 | 190 | 308 | 55 | 54 | 98.1818 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 89.5255 | 86.7232 | 92.5150 | 65.8836 | 307 | 47 | 309 | 25 | 25 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.7732 | 97.1519 | 98.4026 | 72.3498 | 307 | 9 | 308 | 5 | 5 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.0876 | 98.7138 | 93.5976 | 68.7321 | 307 | 4 | 307 | 21 | 20 | 95.2381 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.8728 | 98.0831 | 99.6753 | 34.4681 | 307 | 6 | 307 | 1 | 1 | 100.0000 | |
| jlack-gatk | SNP | * | HG002complexvar | hetalt | 99.0323 | 99.0323 | 99.0323 | 39.5712 | 307 | 3 | 307 | 3 | 3 | 100.0000 | |