PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26901-26950 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.5126 | 96.0245 | 99.0476 | 76.1905 | 314 | 13 | 312 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | * | map_l250_m2_e0 | * | 93.8607 | 94.8640 | 92.8783 | 96.2572 | 314 | 17 | 313 | 24 | 6 | 25.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 89.7143 | 0.0000 | 0.0000 | 314 | 36 | 0 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m2_e0 | * | 93.4524 | 94.8640 | 92.0821 | 97.4260 | 314 | 17 | 314 | 27 | 2 | 7.4074 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | * | 95.0076 | 94.8640 | 95.1515 | 95.0798 | 314 | 17 | 314 | 16 | 2 | 12.5000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 78.7955 | 87.4652 | 71.6895 | 43.9898 | 314 | 45 | 314 | 124 | 87 | 70.1613 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.7178 | 89.7143 | 98.0952 | 43.4470 | 314 | 36 | 309 | 6 | 6 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.6009 | 92.0821 | 99.3994 | 59.3902 | 314 | 27 | 331 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.3450 | 94.8485 | 95.8466 | 76.3952 | 313 | 17 | 300 | 13 | 7 | 53.8462 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0086 | 86.2259 | 98.6226 | 46.2222 | 313 | 50 | 358 | 5 | 5 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 57.0126 | 39.9235 | 99.6805 | 45.7539 | 313 | 471 | 312 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6165 | 96.0123 | 95.2239 | 86.1513 | 313 | 13 | 319 | 16 | 3 | 18.7500 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | homalt | 95.0081 | 91.2536 | 99.0847 | 78.9803 | 313 | 30 | 433 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e1 | het | 87.4676 | 98.7382 | 78.5064 | 92.5981 | 313 | 4 | 431 | 118 | 43 | 36.4407 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 64.6690 | 47.9326 | 99.3631 | 60.5528 | 313 | 340 | 312 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | * | 95.8652 | 94.5619 | 97.2050 | 95.6651 | 313 | 18 | 313 | 9 | 3 | 33.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 58.5125 | 78.4461 | 46.6568 | 31.7444 | 313 | 86 | 314 | 359 | 357 | 99.4429 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | * | 83.5781 | 93.9940 | 75.2404 | 96.4341 | 313 | 20 | 313 | 103 | 15 | 14.5631 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 77.8607 | 63.7475 | 100.0000 | 28.1116 | 313 | 178 | 335 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3655 | 95.4268 | 99.3846 | 34.3434 | 313 | 15 | 323 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.6489 | 94.8485 | 96.4630 | 73.3505 | 313 | 17 | 300 | 11 | 5 | 45.4545 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4967 | 94.8485 | 96.1538 | 71.6106 | 313 | 17 | 300 | 12 | 8 | 66.6667 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.4401 | 91.7889 | 99.3939 | 60.5263 | 313 | 28 | 328 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.6036 | 86.2259 | 100.0000 | 47.3344 | 313 | 50 | 326 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.4444 | 85.9504 | 100.0000 | 47.4960 | 312 | 51 | 325 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e1 | het | 93.4841 | 98.4227 | 89.0173 | 93.4950 | 312 | 5 | 308 | 38 | 14 | 36.8421 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6989 | 95.7055 | 95.6923 | 87.6614 | 312 | 14 | 311 | 14 | 1 | 7.1429 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8400 | 99.6805 | 100.0000 | 34.5560 | 312 | 1 | 339 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | homalt | 29.9424 | 17.6072 | 100.0000 | 97.3595 | 312 | 1460 | 312 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m1_e0 | het | 29.7001 | 17.4594 | 99.3631 | 98.7032 | 312 | 1475 | 312 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.9329 | 94.5455 | 70.7469 | 64.8688 | 312 | 18 | 341 | 141 | 126 | 89.3617 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.4193 | 63.9344 | 75.9336 | 65.0725 | 312 | 176 | 366 | 116 | 104 | 89.6552 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 62.5767 | 48.0000 | 89.8678 | 23.0508 | 312 | 338 | 204 | 23 | 21 | 91.3043 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.2805 | 91.4956 | 99.3921 | 56.4238 | 312 | 29 | 327 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 96.8866 | 95.1220 | 98.7179 | 46.1140 | 312 | 16 | 308 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.3739 | 80.8290 | 77.9703 | 91.5921 | 312 | 74 | 315 | 89 | 52 | 58.4270 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 87.6651 | 82.3219 | 93.7500 | 55.0802 | 312 | 67 | 315 | 21 | 21 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.1342 | 81.8421 | 97.8528 | 62.7854 | 311 | 69 | 319 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5230 | 99.3610 | 99.6855 | 53.7118 | 311 | 2 | 317 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.0411 | 80.9896 | 91.7647 | 78.8951 | 311 | 73 | 312 | 28 | 8 | 28.5714 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.4914 | 70.8428 | 98.7245 | 40.6959 | 311 | 128 | 387 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6795 | 99.3610 | 100.0000 | 35.3430 | 311 | 2 | 311 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.6923 | 100.0000 | 91.7404 | 70.4446 | 311 | 0 | 311 | 28 | 27 | 96.4286 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.5453 | 100.0000 | 91.4706 | 70.3833 | 311 | 0 | 311 | 29 | 28 | 96.5517 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | het | 98.2622 | 98.1073 | 98.4177 | 90.7331 | 311 | 6 | 311 | 5 | 1 | 20.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.6929 | 100.0000 | 93.5976 | 67.5248 | 311 | 0 | 307 | 21 | 20 | 95.2381 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.5453 | 100.0000 | 91.4706 | 70.3833 | 311 | 0 | 311 | 29 | 28 | 96.5517 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.0246 | 94.2424 | 95.8199 | 71.5462 | 311 | 19 | 298 | 13 | 9 | 69.2308 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.6706 | 100.0000 | 82.9333 | 68.7239 | 311 | 0 | 311 | 64 | 63 | 98.4375 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | * | 83.4899 | 93.9577 | 75.1208 | 96.3544 | 311 | 20 | 311 | 103 | 15 | 14.5631 | |