PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26851-26900 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | het | 98.2965 | 97.2393 | 99.3769 | 85.1320 | 317 | 9 | 319 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | * | 96.0606 | 95.1952 | 96.9419 | 95.2325 | 317 | 16 | 317 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.8227 | 94.6269 | 99.1228 | 69.7613 | 317 | 18 | 339 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.8651 | 96.6463 | 99.1150 | 36.8715 | 317 | 11 | 336 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | het | 95.4873 | 92.9619 | 98.1538 | 84.2843 | 317 | 24 | 319 | 6 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e0 | * | 93.2353 | 95.7704 | 90.8309 | 97.3828 | 317 | 14 | 317 | 32 | 4 | 12.5000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 92.9619 | 0.0000 | 0.0000 | 317 | 24 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.6568 | 87.8116 | 89.5184 | 60.6466 | 317 | 44 | 316 | 37 | 30 | 81.0811 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 16.4164 | 0.0000 | 0.0000 | 317 | 1614 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 16.4164 | 0.0000 | 0.0000 | 317 | 1614 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | HG002complexvar | het | 58.4929 | 47.6692 | 75.6757 | 61.6761 | 317 | 348 | 308 | 99 | 23 | 23.2323 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.2624 | 91.6185 | 90.9091 | 64.6231 | 317 | 29 | 320 | 32 | 16 | 50.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 28.5438 | 64.6939 | 18.3115 | 55.1706 | 317 | 173 | 308 | 1374 | 1358 | 98.8355 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 90.8367 | 84.7594 | 97.8528 | 60.4848 | 317 | 57 | 319 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 61.2790 | 48.5452 | 83.0688 | 66.6372 | 317 | 336 | 314 | 64 | 64 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | segdup | homalt | 91.2889 | 88.3008 | 94.4862 | 94.9101 | 317 | 42 | 377 | 22 | 10 | 45.4545 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 72.3508 | 65.5602 | 80.7107 | 93.7629 | 316 | 166 | 318 | 76 | 19 | 25.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.4938 | 92.1283 | 85.1351 | 58.7514 | 316 | 27 | 315 | 55 | 42 | 76.3636 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | * | 93.5413 | 95.4683 | 91.6905 | 95.6635 | 316 | 15 | 320 | 29 | 3 | 10.3448 | |
| ckim-dragen | INDEL | * | map_l250_m2_e1 | * | 93.8972 | 94.8949 | 92.9204 | 96.3411 | 316 | 17 | 315 | 24 | 6 | 25.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9161 | 92.6686 | 99.3994 | 59.6852 | 316 | 25 | 331 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.6649 | 94.3284 | 99.1202 | 69.9029 | 316 | 19 | 338 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.7060 | 96.3415 | 99.1098 | 37.3606 | 316 | 12 | 334 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9161 | 92.6686 | 99.3994 | 59.8795 | 316 | 25 | 331 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.4497 | 95.7576 | 97.1519 | 62.7358 | 316 | 14 | 307 | 9 | 3 | 33.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.3530 | 87.5346 | 100.0000 | 58.9909 | 316 | 45 | 317 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | * | 95.0376 | 94.8949 | 95.1807 | 95.1912 | 316 | 17 | 316 | 16 | 2 | 12.5000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9169 | 92.6686 | 99.4012 | 55.4667 | 316 | 25 | 332 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.0781 | 87.0523 | 100.0000 | 43.3735 | 316 | 47 | 329 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.8766 | 64.7541 | 80.7595 | 87.1336 | 316 | 172 | 319 | 76 | 1 | 1.3158 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m0_e0 | het | 92.9247 | 96.9325 | 89.2351 | 90.6242 | 316 | 10 | 315 | 38 | 12 | 31.5789 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 67.4506 | 68.3983 | 66.5289 | 66.7811 | 316 | 146 | 322 | 162 | 105 | 64.8148 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | * | 77.3562 | 63.7097 | 98.4424 | 89.5098 | 316 | 180 | 316 | 5 | 1 | 20.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | * | 93.4911 | 94.8949 | 92.1283 | 97.4798 | 316 | 17 | 316 | 27 | 2 | 7.4074 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.7596 | 92.3754 | 99.4012 | 59.5152 | 315 | 26 | 332 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.6468 | 94.0299 | 99.4135 | 66.8932 | 315 | 20 | 339 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.2649 | 81.1856 | 94.3284 | 73.0491 | 315 | 73 | 316 | 19 | 13 | 68.4211 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 75.9428 | 62.2530 | 97.3510 | 93.4867 | 315 | 191 | 441 | 12 | 8 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3628 | 96.0366 | 98.7261 | 44.4248 | 315 | 13 | 310 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.6468 | 94.0299 | 99.4135 | 66.8932 | 315 | 20 | 339 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_siren | * | 62.3762 | 61.8861 | 62.8743 | 84.5131 | 315 | 194 | 315 | 186 | 97 | 52.1505 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 81.1856 | 91.0405 | 73.2558 | 68.6589 | 315 | 31 | 315 | 115 | 55 | 47.8261 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | het | 97.8290 | 96.6258 | 99.0625 | 85.1232 | 315 | 11 | 317 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.5232 | 96.3303 | 98.7461 | 78.3582 | 315 | 12 | 315 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | * | 96.0366 | 95.1662 | 96.9231 | 95.1304 | 315 | 16 | 315 | 10 | 3 | 30.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.7847 | 94.0299 | 99.7059 | 69.0909 | 315 | 20 | 339 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.5490 | 96.0366 | 99.1098 | 37.5926 | 315 | 13 | 334 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.8261 | 96.3303 | 99.3691 | 77.2434 | 315 | 12 | 315 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 73.3411 | 59.7723 | 94.8795 | 89.6250 | 315 | 212 | 315 | 17 | 16 | 94.1176 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | * | 95.8904 | 94.5946 | 97.2222 | 95.7558 | 315 | 18 | 315 | 9 | 3 | 33.3333 | |