PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26451-26500 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4047 | 99.1254 | 97.6945 | 56.8408 | 340 | 3 | 339 | 8 | 4 | 50.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.2479 | 94.7075 | 55.8292 | 51.1236 | 340 | 19 | 340 | 269 | 269 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.2949 | 45.8221 | 83.9901 | 84.3906 | 340 | 402 | 341 | 65 | 1 | 1.5385 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.6596 | 99.1254 | 98.1982 | 85.1326 | 340 | 3 | 545 | 10 | 9 | 90.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 85.4907 | 340 | 1 | 340 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 85.0480 | 340 | 1 | 340 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.9811 | 99.1254 | 98.8372 | 84.8791 | 340 | 3 | 340 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.1959 | 89.4737 | 99.4444 | 63.3401 | 340 | 40 | 358 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 89.4716 | 98.2609 | 82.1256 | 91.8808 | 339 | 6 | 340 | 74 | 2 | 2.7027 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 52.6463 | 45.0798 | 63.2653 | 66.5529 | 339 | 413 | 372 | 216 | 150 | 69.4444 | |
| gduggal-snapplat | SNP | ti | map_l250_m0_e0 | homalt | 87.2580 | 77.7523 | 99.4118 | 93.2647 | 339 | 97 | 338 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | het | 89.3281 | 98.2609 | 81.8841 | 92.0000 | 339 | 6 | 339 | 75 | 9 | 12.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4135 | 99.4135 | 99.4135 | 84.6119 | 339 | 2 | 339 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1228 | 98.8338 | 99.4135 | 83.7309 | 339 | 4 | 339 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.3090 | 93.6464 | 70.2970 | 75.8518 | 339 | 23 | 284 | 120 | 119 | 99.1667 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2679 | 99.4135 | 99.1228 | 84.7048 | 339 | 2 | 339 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 28.4651 | 25.7208 | 31.8650 | 61.9879 | 339 | 979 | 340 | 727 | 723 | 99.4498 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5585 | 98.2609 | 96.8661 | 90.0256 | 339 | 6 | 340 | 11 | 1 | 9.0909 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.8321 | 98.8338 | 98.8304 | 83.8298 | 339 | 4 | 338 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | homalt | 68.0723 | 66.6012 | 69.6099 | 79.4167 | 339 | 170 | 339 | 148 | 123 | 83.1081 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6348 | 93.9058 | 97.4286 | 67.0123 | 339 | 22 | 341 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1211 | 98.8338 | 99.4100 | 80.8041 | 339 | 4 | 337 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 96.3154 | 93.3884 | 99.4318 | 53.2537 | 339 | 24 | 350 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.1073 | 98.8338 | 97.3913 | 53.1886 | 339 | 4 | 336 | 9 | 3 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.2679 | 99.4135 | 99.1228 | 84.9406 | 339 | 2 | 339 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.9769 | 97.9769 | 97.9769 | 76.3823 | 339 | 7 | 339 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | het | 97.8094 | 98.2609 | 97.3621 | 87.4018 | 339 | 6 | 406 | 11 | 4 | 36.3636 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.8249 | 55.6650 | 93.6464 | 87.2714 | 339 | 270 | 339 | 23 | 17 | 73.9130 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6471 | 99.1202 | 98.1785 | 85.0123 | 338 | 3 | 539 | 10 | 9 | 90.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002compoundhet | het | 32.6811 | 83.4568 | 20.3190 | 35.8955 | 338 | 67 | 344 | 1349 | 1346 | 99.7776 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 97.8292 | 97.9710 | 97.6879 | 87.4501 | 338 | 7 | 338 | 8 | 1 | 12.5000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.1150 | 99.1202 | 99.1098 | 84.2670 | 338 | 3 | 334 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6836 | 99.1202 | 98.2507 | 89.4526 | 338 | 3 | 337 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8292 | 97.6879 | 97.9710 | 69.1137 | 338 | 8 | 338 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.9751 | 99.1202 | 98.8304 | 84.6843 | 338 | 3 | 338 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9710 | 97.6879 | 98.2558 | 68.8688 | 338 | 8 | 338 | 6 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | segdup | homalt | 93.5483 | 94.1504 | 92.9539 | 93.9028 | 338 | 21 | 343 | 26 | 18 | 69.2308 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 93.3603 | 88.9474 | 98.2340 | 60.9483 | 338 | 42 | 445 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.2687 | 95.4802 | 99.1254 | 71.1036 | 338 | 16 | 340 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.1202 | 98.5423 | 99.7050 | 56.9250 | 338 | 5 | 338 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 88.3660 | 81.6425 | 96.2963 | 68.1777 | 338 | 76 | 338 | 13 | 13 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | het | 77.8675 | 83.4568 | 72.9798 | 46.7026 | 338 | 67 | 578 | 214 | 199 | 92.9907 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 76.0681 | 70.4167 | 82.7057 | 61.6372 | 338 | 142 | 1186 | 248 | 176 | 70.9677 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.9751 | 99.1202 | 98.8304 | 85.5635 | 338 | 3 | 338 | 4 | 1 | 25.0000 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | homalt | 53.0196 | 36.0726 | 100.0000 | 87.3075 | 338 | 599 | 338 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.1098 | 96.8481 | 99.4048 | 82.6536 | 338 | 11 | 334 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.7509 | 337 | 9 | 337 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.0064 | 337 | 9 | 337 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.8253 | 98.8270 | 98.8235 | 83.5590 | 337 | 4 | 336 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 72.4320 | 65.5642 | 80.9069 | 93.9773 | 337 | 177 | 339 | 80 | 21 | 26.2500 | |