PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25101-25150 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.0938 | 92.8279 | 95.3947 | 79.6156 | 453 | 35 | 435 | 21 | 12 | 57.1429 | |
| anovak-vg | INDEL | D1_5 | map_l150_m2_e0 | het | 81.1800 | 88.1323 | 75.2443 | 90.1933 | 453 | 61 | 462 | 152 | 57 | 37.5000 | |
| mlin-fermikit | SNP | tv | map_l250_m1_e0 | het | 40.2130 | 25.3497 | 97.2103 | 81.1869 | 453 | 1334 | 453 | 13 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7655 | 97.6293 | 97.9021 | 61.5936 | 453 | 11 | 420 | 9 | 3 | 33.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.5095 | 98.0519 | 84.0445 | 60.8569 | 453 | 9 | 453 | 86 | 40 | 46.5116 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | homalt | 98.1582 | 98.0519 | 98.2646 | 89.3558 | 453 | 9 | 453 | 8 | 6 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0164 | 98.0519 | 100.0000 | 48.4429 | 453 | 9 | 447 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8794 | 97.6293 | 98.1308 | 62.4890 | 453 | 11 | 420 | 8 | 3 | 37.5000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m1_e0 | homalt | 98.8000 | 98.0519 | 99.5595 | 83.2163 | 453 | 9 | 452 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | * | map_l150_m1_e0 | homalt | 98.5854 | 98.0519 | 99.1247 | 88.7105 | 453 | 9 | 453 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | homalt | 95.1579 | 91.8699 | 98.6900 | 87.1240 | 452 | 40 | 452 | 6 | 4 | 66.6667 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | homalt | 73.5557 | 58.3979 | 99.3407 | 81.3295 | 452 | 322 | 452 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | * | map_l150_m2_e1 | homalt | 94.6597 | 91.8699 | 97.6242 | 87.5504 | 452 | 40 | 452 | 11 | 4 | 36.3636 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.5603 | 97.8355 | 93.3884 | 59.3960 | 452 | 10 | 452 | 32 | 19 | 59.3750 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.9854 | 96.3753 | 91.7112 | 76.9278 | 452 | 17 | 343 | 31 | 12 | 38.7097 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.9415 | 96.3753 | 99.5595 | 86.6901 | 452 | 17 | 452 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 62.3378 | 47.0343 | 92.4025 | 85.6385 | 452 | 509 | 450 | 37 | 14 | 37.8378 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.6771 | 64.8494 | 100.0000 | 41.7085 | 452 | 245 | 116 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.5881 | 92.6230 | 92.5532 | 80.7456 | 452 | 36 | 435 | 35 | 16 | 45.7143 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.7880 | 96.3753 | 97.2043 | 81.1588 | 452 | 17 | 452 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 84.4639 | 91.8699 | 78.1629 | 66.9151 | 452 | 40 | 451 | 126 | 119 | 94.4444 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.9467 | 95.9574 | 74.6082 | 62.8854 | 451 | 19 | 476 | 162 | 26 | 16.0494 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4518 | 90.7445 | 98.4749 | 72.4655 | 451 | 46 | 452 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.6399 | 92.0408 | 65.6542 | 80.0373 | 451 | 39 | 281 | 147 | 142 | 96.5986 | |
| asubramanian-gatk | INDEL | * | map_l150_m2_e1 | homalt | 95.3495 | 91.6667 | 99.3407 | 90.2129 | 451 | 41 | 452 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3628 | 97.1983 | 99.5556 | 70.8549 | 451 | 13 | 448 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7191 | 97.1983 | 98.2456 | 71.4465 | 451 | 13 | 448 | 8 | 7 | 87.5000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.0614 | 93.9583 | 98.2609 | 81.1243 | 451 | 29 | 452 | 8 | 7 | 87.5000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.9595 | 93.9583 | 98.0477 | 81.2678 | 451 | 29 | 452 | 9 | 7 | 77.7778 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 86.9474 | 92.0408 | 82.3881 | 83.0380 | 451 | 39 | 276 | 59 | 57 | 96.6102 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.5455 | 97.6190 | 84.4278 | 68.9032 | 451 | 11 | 450 | 83 | 83 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e0 | homalt | 96.1607 | 93.7630 | 98.6842 | 84.8907 | 451 | 30 | 450 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.6652 | 92.4180 | 58.5235 | 76.3191 | 451 | 37 | 436 | 309 | 284 | 91.9094 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.3778 | 69.3846 | 98.3834 | 31.9182 | 451 | 199 | 426 | 7 | 6 | 85.7143 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.6549 | 93.9583 | 97.4138 | 82.6607 | 451 | 29 | 452 | 12 | 11 | 91.6667 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.0637 | 95.9574 | 96.1702 | 60.0680 | 451 | 19 | 452 | 18 | 6 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | * | 76.6610 | 62.7615 | 98.4683 | 90.0131 | 450 | 267 | 450 | 7 | 3 | 42.8571 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.5081 | 95.9488 | 99.1189 | 81.2706 | 450 | 19 | 450 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2518 | 96.9828 | 99.5546 | 70.6344 | 450 | 14 | 447 | 2 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m1_e0 | het | 93.7500 | 92.5926 | 94.9367 | 88.7357 | 450 | 36 | 450 | 24 | 17 | 70.8333 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | homalt | 98.1461 | 97.4026 | 98.9011 | 86.8269 | 450 | 12 | 450 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.1561 | 92.0082 | 72.5938 | 67.9226 | 449 | 39 | 445 | 168 | 63 | 37.5000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 80.2391 | 68.1335 | 97.5758 | 51.1834 | 449 | 210 | 644 | 16 | 13 | 81.2500 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 80.2391 | 68.1335 | 97.5758 | 51.1834 | 449 | 210 | 644 | 16 | 13 | 81.2500 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.5344 | 93.5417 | 97.6139 | 77.7831 | 449 | 31 | 450 | 11 | 7 | 63.6364 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7263 | 84.7170 | 100.0000 | 48.5116 | 449 | 81 | 467 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7263 | 84.7170 | 100.0000 | 48.6813 | 449 | 81 | 467 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 95.8396 | 93.5417 | 98.2533 | 81.8470 | 449 | 31 | 450 | 8 | 7 | 87.5000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1406 | 96.7672 | 99.5536 | 71.0407 | 449 | 15 | 446 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 68.9415 | 78.6340 | 61.3762 | 40.0333 | 449 | 122 | 1106 | 696 | 623 | 89.5115 | |