PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25051-25100 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9156 | 98.4914 | 99.3435 | 72.0489 | 457 | 7 | 454 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3478 | 98.9177 | 99.7817 | 27.8740 | 457 | 5 | 457 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5976 | 97.4414 | 99.7817 | 85.6785 | 457 | 12 | 457 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.2239 | 74.1883 | 89.7338 | 67.9659 | 457 | 159 | 472 | 54 | 43 | 79.6296 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3495 | 98.9177 | 99.7849 | 42.8747 | 457 | 5 | 464 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | homalt | 96.3119 | 95.0104 | 97.6496 | 92.1345 | 457 | 24 | 457 | 11 | 8 | 72.7273 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.0121 | 91.9517 | 98.2833 | 74.7972 | 457 | 40 | 458 | 8 | 6 | 75.0000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | homalt | 98.9177 | 98.9177 | 98.9177 | 87.2411 | 457 | 5 | 457 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | * | map_l150_m1_e0 | homalt | 98.8082 | 98.7013 | 98.9154 | 89.0629 | 456 | 6 | 456 | 5 | 3 | 60.0000 | |
| ciseli-custom | INDEL | * | map_l125_m2_e0 | homalt | 67.2566 | 59.7641 | 76.8971 | 88.5455 | 456 | 307 | 456 | 137 | 107 | 78.1022 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 98.7013 | 0.0000 | 0.0000 | 456 | 6 | 0 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | homalt | 98.9154 | 98.7013 | 99.1304 | 89.0840 | 456 | 6 | 456 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 44.3448 | 92.6829 | 29.1447 | 34.4863 | 456 | 36 | 552 | 1342 | 1201 | 89.4933 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | homalt | 98.7013 | 98.7013 | 98.7013 | 88.1081 | 456 | 6 | 456 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.6833 | 93.4426 | 95.9574 | 81.3344 | 456 | 32 | 451 | 19 | 18 | 94.7368 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 73.3639 | 62.2101 | 89.3910 | 71.1778 | 456 | 277 | 455 | 54 | 30 | 55.5556 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.1082 | 50.8361 | 98.7013 | 60.3433 | 456 | 441 | 456 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 84.5227 | 93.4426 | 77.1574 | 75.5280 | 456 | 32 | 456 | 135 | 119 | 88.1481 | |
| qzeng-custom | INDEL | D6_15 | map_siren | * | 82.8301 | 89.5874 | 77.0206 | 83.5033 | 456 | 53 | 486 | 145 | 21 | 14.4828 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | homalt | 98.5915 | 98.4848 | 98.6985 | 87.6408 | 455 | 7 | 455 | 6 | 4 | 66.6667 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2222 | 94.5946 | 100.0000 | 40.2102 | 455 | 26 | 455 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4009 | 91.5493 | 97.4359 | 75.4588 | 455 | 42 | 456 | 12 | 12 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.5968 | 91.5493 | 97.8541 | 75.8173 | 455 | 42 | 456 | 10 | 7 | 70.0000 | |
| jlack-gatk | INDEL | * | map_l150_m1_e0 | homalt | 98.5915 | 98.4848 | 98.6985 | 88.1613 | 455 | 7 | 455 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.9123 | 83.3333 | 97.6190 | 70.4225 | 455 | 91 | 451 | 11 | 8 | 72.7273 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | het | 96.3970 | 93.6214 | 99.3421 | 76.3363 | 455 | 31 | 453 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.1302 | 98.4848 | 99.7840 | 42.2693 | 455 | 7 | 462 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.1970 | 96.8085 | 86.2004 | 69.9943 | 455 | 15 | 456 | 73 | 58 | 79.4521 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.7334 | 83.3333 | 97.1983 | 70.7071 | 455 | 91 | 451 | 13 | 8 | 61.5385 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4009 | 91.5493 | 97.4359 | 75.4588 | 455 | 42 | 456 | 12 | 12 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 89.1082 | 96.8085 | 82.5427 | 65.8679 | 455 | 15 | 435 | 92 | 82 | 89.1304 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.4987 | 91.5493 | 97.6445 | 76.0021 | 455 | 42 | 456 | 11 | 11 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7942 | 85.6604 | 98.8743 | 47.1754 | 454 | 76 | 527 | 6 | 6 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 93.8042 | 89.3701 | 98.7013 | 89.4569 | 454 | 54 | 456 | 6 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | segdup | homalt | 68.8866 | 95.9831 | 53.7209 | 91.7355 | 454 | 19 | 462 | 398 | 376 | 94.4724 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.5406 | 92.6531 | 66.6667 | 80.5140 | 454 | 36 | 278 | 139 | 134 | 96.4029 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.8030 | 98.2684 | 99.3435 | 58.5675 | 454 | 8 | 454 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.5245 | 69.8462 | 97.8923 | 31.4607 | 454 | 196 | 418 | 9 | 8 | 88.8889 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | het | 71.6654 | 57.2509 | 95.7806 | 78.7349 | 454 | 339 | 454 | 20 | 12 | 60.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.0811 | 92.6531 | 67.4699 | 80.7692 | 454 | 36 | 280 | 135 | 130 | 96.2963 | |
| dgrover-gatk | INDEL | * | map_l150_m1_e0 | homalt | 98.4816 | 98.2684 | 98.6957 | 88.7778 | 454 | 8 | 454 | 6 | 3 | 50.0000 | |
| egarrison-hhga | INDEL | * | map_l150_m1_e0 | homalt | 98.3749 | 98.2684 | 98.4816 | 88.2067 | 454 | 8 | 454 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 86.9857 | 77.8731 | 98.5138 | 67.0860 | 454 | 129 | 464 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.0963 | 91.3481 | 97.0149 | 75.7623 | 454 | 43 | 455 | 14 | 10 | 71.4286 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.8457 | 34.5247 | 50.0000 | 39.0585 | 454 | 861 | 479 | 479 | 439 | 91.6493 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 59.1149 | 52.9755 | 66.8639 | 88.9180 | 454 | 403 | 452 | 224 | 193 | 86.1607 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 73.3002 | 96.8017 | 58.9809 | 87.2316 | 454 | 15 | 463 | 322 | 72 | 22.3602 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | homalt | 98.4759 | 98.0519 | 98.9035 | 88.0940 | 453 | 9 | 451 | 5 | 4 | 80.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.8473 | 92.4490 | 67.2289 | 80.6707 | 453 | 37 | 279 | 136 | 131 | 96.3235 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.0651 | 92.4490 | 67.5545 | 80.7459 | 453 | 37 | 279 | 134 | 129 | 96.2687 | |