PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
24301-24350 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.3282 | 98.2283 | 98.4283 | 88.5257 | 499 | 9 | 501 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.4256 | 98.6166 | 98.2353 | 89.2541 | 499 | 7 | 501 | 9 | 2 | 22.2222 | |
| mlin-fermikit | INDEL | * | map_l100_m0_e0 | het | 63.6557 | 48.8737 | 91.2568 | 79.7342 | 499 | 522 | 501 | 48 | 14 | 29.1667 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6462 | 96.1464 | 99.1935 | 86.0635 | 499 | 20 | 492 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5562 | 97.0817 | 98.0354 | 87.9212 | 499 | 15 | 499 | 10 | 3 | 30.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | * | 74.9249 | 60.1205 | 99.4024 | 93.7871 | 499 | 331 | 499 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e1 | het | 94.3638 | 98.2283 | 90.7919 | 91.5103 | 499 | 9 | 493 | 50 | 22 | 44.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.1762 | 96.3320 | 98.0354 | 75.0368 | 499 | 19 | 499 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | het | 94.0622 | 98.2283 | 90.2351 | 92.3365 | 499 | 9 | 499 | 54 | 18 | 33.3333 | |
| jpowers-varprowl | INDEL | I16_PLUS | HG002complexvar | het | 71.5885 | 75.0376 | 68.4426 | 63.7803 | 499 | 166 | 501 | 231 | 229 | 99.1342 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 98.9102 | 98.2283 | 99.6016 | 86.3661 | 499 | 9 | 500 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 96.5214 | 98.0315 | 95.0570 | 92.5273 | 498 | 10 | 500 | 26 | 1 | 3.8462 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | homalt | 98.5147 | 97.8389 | 99.2000 | 76.5368 | 498 | 11 | 496 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 76.9319 | 72.4891 | 81.9549 | 59.4512 | 498 | 189 | 1308 | 288 | 179 | 62.1528 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | het | 98.5163 | 98.0315 | 99.0060 | 87.2108 | 498 | 10 | 498 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m1_e0 | * | 98.6139 | 98.4190 | 98.8095 | 88.8938 | 498 | 8 | 498 | 6 | 1 | 16.6667 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 94.5144 | 98.0315 | 91.2409 | 91.8416 | 498 | 10 | 500 | 48 | 3 | 6.2500 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9076 | 98.2249 | 99.6000 | 84.9034 | 498 | 9 | 498 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.4221 | 98.4190 | 98.4252 | 87.6729 | 498 | 8 | 500 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.1045 | 98.2249 | 100.0000 | 84.7380 | 498 | 9 | 498 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m1_e0 | * | 98.3218 | 98.4190 | 98.2249 | 89.3800 | 498 | 8 | 498 | 9 | 2 | 22.2222 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.6087 | 82.5871 | 91.0420 | 67.8424 | 498 | 105 | 498 | 49 | 34 | 69.3878 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 98.4213 | 98.0315 | 98.8142 | 89.0239 | 498 | 10 | 500 | 6 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 96.2251 | 95.9538 | 96.4981 | 89.5528 | 498 | 21 | 496 | 18 | 3 | 16.6667 | |
| ciseli-custom | INDEL | D1_5 | * | hetalt | 0.0000 | 4.8609 | 0.0000 | 0.0000 | 498 | 9747 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 74.8992 | 68.5950 | 82.4793 | 92.0478 | 498 | 228 | 499 | 106 | 22 | 20.7547 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8962 | 98.4190 | 95.4198 | 92.2035 | 498 | 8 | 500 | 24 | 3 | 12.5000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m2_e1 | het | 98.2280 | 98.0315 | 98.4252 | 88.1750 | 498 | 10 | 500 | 8 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 98.3253 | 98.4190 | 98.2318 | 89.1587 | 498 | 8 | 500 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0067 | 98.2249 | 99.8012 | 86.1050 | 498 | 9 | 502 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.4178 | 97.8346 | 99.0079 | 86.3821 | 497 | 11 | 499 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0040 | 98.0276 | 100.0000 | 80.7123 | 497 | 10 | 482 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e1 | het | 93.7736 | 95.2107 | 92.3792 | 90.5348 | 497 | 25 | 497 | 41 | 21 | 51.2195 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.1230 | 32.4837 | 56.0227 | 78.9373 | 497 | 1033 | 493 | 387 | 383 | 98.9664 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 41.1230 | 32.4837 | 56.0227 | 78.9373 | 497 | 1033 | 493 | 387 | 383 | 98.9664 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 31.2372 | 20.6053 | 64.5372 | 76.8976 | 497 | 1915 | 495 | 272 | 252 | 92.6471 | |
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | * | 96.6054 | 96.6926 | 96.5184 | 90.3545 | 497 | 17 | 499 | 18 | 2 | 11.1111 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 84.8955 | 75.4173 | 97.0986 | 64.6133 | 497 | 162 | 502 | 15 | 11 | 73.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 84.8955 | 75.4173 | 97.0986 | 64.6133 | 497 | 162 | 502 | 15 | 11 | 73.3333 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 98.4186 | 98.2213 | 98.6166 | 89.9303 | 497 | 9 | 499 | 7 | 2 | 28.5714 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | * | 95.3887 | 95.7611 | 95.0192 | 91.2077 | 497 | 22 | 496 | 26 | 7 | 26.9231 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 50.1574 | 67.0715 | 40.0560 | 49.5050 | 497 | 244 | 1573 | 2354 | 1678 | 71.2829 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 64.9197 | 98.0276 | 48.5294 | 92.7910 | 497 | 10 | 495 | 525 | 34 | 6.4762 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.9280 | 67.6190 | 86.5649 | 44.3027 | 497 | 238 | 567 | 88 | 88 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 55.2529 | 51.8248 | 59.1667 | 72.9556 | 497 | 462 | 497 | 343 | 309 | 90.0875 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.7821 | 85.1027 | 99.5992 | 26.0741 | 497 | 87 | 497 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | * | 93.9848 | 95.5684 | 92.4528 | 91.6272 | 496 | 23 | 490 | 40 | 14 | 35.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | * | 68.2636 | 57.4739 | 84.0407 | 76.2404 | 496 | 367 | 495 | 94 | 78 | 82.9787 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 95.3876 | 92.5373 | 98.4190 | 58.7276 | 496 | 40 | 498 | 8 | 6 | 75.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 95.4901 | 98.0237 | 93.0841 | 91.9135 | 496 | 10 | 498 | 37 | 4 | 10.8108 | |