PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23901-23950 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1533 | 99.2467 | 99.0602 | 82.1116 | 527 | 4 | 527 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3402 | 99.2467 | 99.4340 | 80.8110 | 527 | 4 | 527 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 68.6915 | 87.3964 | 56.5817 | 68.5791 | 527 | 76 | 533 | 409 | 399 | 97.5550 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 62.0379 | 61.0660 | 63.0412 | 57.2267 | 527 | 336 | 597 | 350 | 266 | 76.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.6891 | 99.2467 | 98.1378 | 87.1161 | 527 | 4 | 527 | 10 | 4 | 40.0000 | |
| egarrison-hhga | INDEL | I1_5 | segdup | het | 98.2247 | 97.7695 | 98.6842 | 94.9835 | 526 | 12 | 525 | 7 | 1 | 14.2857 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3193 | 96.8692 | 97.7737 | 89.6605 | 526 | 17 | 527 | 12 | 2 | 16.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1517 | 99.0584 | 99.2453 | 82.4212 | 526 | 5 | 526 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | het | 98.4089 | 97.7695 | 99.0566 | 94.8166 | 526 | 12 | 525 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3383 | 99.0584 | 99.6198 | 77.9732 | 526 | 5 | 524 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | het | 98.4123 | 97.7695 | 99.0637 | 96.0327 | 526 | 12 | 529 | 5 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e0 | * | 59.4733 | 61.3769 | 57.6842 | 87.5801 | 526 | 331 | 548 | 402 | 273 | 67.9104 | |
| ltrigg-rtg1 | INDEL | I1_5 | segdup | het | 98.3082 | 97.7695 | 98.8528 | 93.0710 | 526 | 12 | 517 | 6 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 68.7717 | 525 | 0 | 539 | 0 | 0 | ||
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.2489 | 525 | 0 | 525 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.7778 | 99.6205 | 94.0928 | 82.7887 | 525 | 2 | 446 | 28 | 25 | 89.2857 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 525 | 0 | 525 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.4115 | 525 | 0 | 525 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.7712 | 99.6205 | 94.0803 | 83.0466 | 525 | 2 | 445 | 28 | 26 | 92.8571 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.5124 | 525 | 0 | 525 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.8690 | 98.8701 | 98.8679 | 81.2057 | 525 | 6 | 524 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.7712 | 99.6205 | 94.0803 | 83.0466 | 525 | 2 | 445 | 28 | 26 | 92.8571 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 96.5832 | 96.6851 | 96.4815 | 84.1223 | 525 | 18 | 521 | 19 | 5 | 26.3158 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 83.8286 | 85.9247 | 81.8323 | 83.8435 | 525 | 86 | 527 | 117 | 100 | 85.4701 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 75.0226 | 68.7173 | 82.6019 | 92.3012 | 525 | 239 | 527 | 111 | 23 | 20.7207 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 74.1130 | 68.8073 | 80.3053 | 92.8974 | 525 | 238 | 526 | 129 | 61 | 47.2868 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 29.9351 | 28.5016 | 31.5205 | 88.2158 | 525 | 1317 | 539 | 1171 | 52 | 4.4407 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.6276 | 525 | 0 | 539 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0584 | 100.0000 | 98.1343 | 71.2755 | 525 | 0 | 526 | 10 | 10 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 71.9914 | 525 | 0 | 519 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | segdup | het | 97.4851 | 97.5836 | 97.3868 | 95.7292 | 525 | 13 | 559 | 15 | 2 | 13.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.6126 | 525 | 0 | 525 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.7122 | 525 | 0 | 525 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 68.9533 | 525 | 0 | 525 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.7914 | 525 | 0 | 525 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4994 | 98.6817 | 98.3178 | 90.3967 | 524 | 7 | 526 | 9 | 2 | 22.2222 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9047 | 99.8095 | 100.0000 | 67.7340 | 524 | 1 | 524 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.7811 | 99.8095 | 97.7737 | 75.2184 | 524 | 1 | 527 | 12 | 6 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.9613 | 97.9439 | 100.0000 | 73.6658 | 524 | 11 | 528 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | segdup | het | 97.7612 | 97.3978 | 98.1273 | 94.4800 | 524 | 14 | 524 | 10 | 6 | 60.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | * | 55.0131 | 38.2482 | 97.9439 | 98.4056 | 524 | 846 | 524 | 11 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.1035 | 99.4307 | 94.8827 | 83.0011 | 524 | 3 | 445 | 24 | 24 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 98.8688 | 98.6817 | 99.0566 | 89.1616 | 524 | 7 | 525 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9047 | 99.8095 | 100.0000 | 67.8528 | 524 | 1 | 524 | 0 | 0 | ||
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0596 | 99.8095 | 98.3209 | 76.9759 | 524 | 1 | 527 | 9 | 6 | 66.6667 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.8935 | 85.7610 | 94.4444 | 82.5788 | 524 | 87 | 527 | 31 | 29 | 93.5484 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.6882 | 99.4307 | 94.0928 | 82.7133 | 524 | 3 | 446 | 28 | 28 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9047 | 99.8095 | 100.0000 | 67.3317 | 524 | 1 | 524 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | * | 75.1793 | 60.7184 | 98.6817 | 93.9453 | 524 | 339 | 524 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | het | 80.4615 | 67.9221 | 98.6792 | 94.7881 | 523 | 247 | 523 | 7 | 1 | 14.2857 | |