PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23451-23500 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 40.5868 | 37.3203 | 44.4800 | 81.8709 | 571 | 959 | 556 | 694 | 384 | 55.3314 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 80.9908 | 72.0050 | 92.5390 | 89.7242 | 571 | 222 | 831 | 67 | 13 | 19.4030 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.7811 | 94.6932 | 90.9448 | 44.0938 | 571 | 32 | 3706 | 369 | 326 | 88.3469 | |
| ndellapenna-hhga | SNP | ti | HG002compoundhet | hetalt | 99.3043 | 98.6183 | 100.0000 | 23.0458 | 571 | 8 | 571 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3000 | 98.9583 | 99.6441 | 61.5332 | 570 | 6 | 560 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | * | hetalt | 98.5307 | 97.9381 | 99.1304 | 54.1467 | 570 | 12 | 570 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.3609 | 86.1027 | 90.7407 | 70.8221 | 570 | 92 | 686 | 70 | 40 | 57.1429 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 45.2624 | 94.5183 | 29.7558 | 27.9326 | 569 | 33 | 585 | 1381 | 1290 | 93.4106 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 65.1402 | 48.3022 | 100.0000 | 66.1836 | 569 | 609 | 560 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3019 | 98.7847 | 99.8246 | 69.4206 | 569 | 7 | 569 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | het | 97.1036 | 96.9336 | 97.2743 | 89.2313 | 569 | 18 | 571 | 16 | 4 | 25.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.3762 | 93.4319 | 95.3398 | 81.6399 | 569 | 40 | 491 | 24 | 16 | 66.6667 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.7077 | 92.3701 | 95.0845 | 58.6667 | 569 | 47 | 619 | 32 | 28 | 87.5000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.5150 | 99.6497 | 95.4698 | 67.0354 | 569 | 2 | 569 | 27 | 27 | 100.0000 | |
| ckim-gatk | SNP | ti | * | hetalt | 98.5281 | 97.7663 | 99.3019 | 52.5269 | 569 | 13 | 569 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l150_m2_e0 | het | 66.9093 | 62.8035 | 71.5895 | 93.6451 | 569 | 337 | 572 | 227 | 132 | 58.1498 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5281 | 99.6497 | 97.4315 | 67.4470 | 569 | 2 | 569 | 15 | 15 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 31.2294 | 0.0000 | 0.0000 | 569 | 1253 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.2221 | 92.9624 | 97.5945 | 78.4125 | 568 | 43 | 568 | 14 | 2 | 14.2857 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.4281 | 96.1083 | 98.7847 | 80.3413 | 568 | 23 | 569 | 7 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.8467 | 99.4746 | 96.2712 | 66.6478 | 568 | 3 | 568 | 22 | 22 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | het | 96.9382 | 96.7632 | 97.1138 | 88.6556 | 568 | 19 | 572 | 17 | 2 | 11.7647 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.4074 | 92.9624 | 64.8574 | 57.8355 | 568 | 43 | 705 | 382 | 375 | 98.1675 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.0120 | 93.2677 | 98.9228 | 69.2605 | 568 | 41 | 551 | 6 | 3 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.5107 | 96.1083 | 98.9547 | 73.4013 | 568 | 23 | 568 | 6 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | het | 97.3196 | 99.3007 | 95.4160 | 94.4664 | 568 | 4 | 562 | 27 | 2 | 7.4074 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.6111 | 99.4746 | 97.7625 | 67.1751 | 568 | 3 | 568 | 13 | 13 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 88.5339 | 85.2853 | 92.0398 | 83.8251 | 568 | 98 | 555 | 48 | 27 | 56.2500 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 88.5339 | 85.2853 | 92.0398 | 83.8251 | 568 | 98 | 555 | 48 | 27 | 56.2500 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 76.6987 | 63.3222 | 97.2403 | 40.8261 | 568 | 329 | 599 | 17 | 14 | 82.3529 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.8650 | 92.9624 | 98.9547 | 77.9992 | 568 | 43 | 568 | 6 | 2 | 33.3333 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5256 | 99.4746 | 97.5945 | 65.3571 | 568 | 3 | 568 | 14 | 14 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.1850 | 99.4746 | 96.9283 | 66.0880 | 568 | 3 | 568 | 18 | 18 | 100.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 4.0479 | 0.0000 | 0.0000 | 568 | 13464 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5211 | 99.2995 | 97.7547 | 53.9013 | 567 | 4 | 566 | 13 | 13 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5230 | 99.2995 | 97.7586 | 67.1946 | 567 | 4 | 567 | 13 | 13 | 100.0000 | |
| gduggal-bwavard | INDEL | * | HG002compoundhet | homalt | 86.6968 | 82.6531 | 91.1565 | 55.5556 | 567 | 119 | 536 | 52 | 47 | 90.3846 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.4375 | 99.2995 | 97.5904 | 67.0261 | 567 | 4 | 567 | 14 | 14 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m0_e0 | het | 94.5116 | 95.9391 | 93.1260 | 81.3150 | 567 | 24 | 569 | 42 | 5 | 11.9048 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0393 | 99.2995 | 98.7805 | 65.9953 | 567 | 4 | 567 | 7 | 7 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 97.0890 | 0.0000 | 0.0000 | 567 | 17 | 0 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 89.0110 | 82.5328 | 96.5928 | 74.6983 | 567 | 120 | 567 | 20 | 17 | 85.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9948 | 94.0299 | 93.9597 | 71.1380 | 567 | 36 | 560 | 36 | 34 | 94.4444 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | het | 97.2591 | 96.5928 | 97.9346 | 88.6168 | 567 | 20 | 569 | 12 | 3 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5230 | 99.2995 | 97.7586 | 67.1946 | 567 | 4 | 567 | 13 | 13 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.8453 | 98.4375 | 97.2603 | 65.7277 | 567 | 9 | 568 | 16 | 12 | 75.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m0_e0 | het | 96.8078 | 96.5928 | 97.0238 | 87.4308 | 567 | 20 | 815 | 25 | 12 | 48.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m0_e0 | het | 95.3743 | 96.5928 | 94.1860 | 94.0596 | 567 | 20 | 567 | 35 | 1 | 2.8571 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.1637 | 81.3486 | 93.8742 | 45.8781 | 567 | 130 | 567 | 37 | 37 | 100.0000 | |
| jmaeng-gatk | SNP | ti | HG002compoundhet | hetalt | 98.9529 | 97.9275 | 100.0000 | 22.2222 | 567 | 12 | 567 | 0 | 0 | ||