PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23351-23400 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | homalt | 49.1915 | 32.6185 | 100.0000 | 95.2072 | 578 | 1194 | 577 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | HG002compoundhet | hetalt | 99.8980 | 99.8273 | 99.9687 | 18.5958 | 578 | 1 | 6398 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m0_e0 | het | 97.4705 | 97.8003 | 97.1429 | 84.6491 | 578 | 13 | 578 | 17 | 3 | 17.6471 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | het | 98.0506 | 97.8003 | 98.3022 | 82.9226 | 578 | 13 | 579 | 10 | 1 | 10.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3981 | 98.9726 | 99.8273 | 17.0487 | 578 | 6 | 578 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | HG002compoundhet | hetalt | 99.9136 | 99.8273 | 100.0000 | 21.6802 | 578 | 1 | 578 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.4836 | 98.9726 | 100.0000 | 18.6798 | 578 | 6 | 579 | 0 | 0 | ||
| jlack-gatk | SNP | ti | * | hetalt | 98.8034 | 99.3127 | 98.2993 | 52.8846 | 578 | 4 | 578 | 10 | 10 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.4836 | 98.9726 | 100.0000 | 18.6798 | 578 | 6 | 579 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | HG002compoundhet | hetalt | 97.8831 | 99.8273 | 96.0133 | 26.9417 | 578 | 1 | 578 | 24 | 6 | 25.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 24.5228 | 33.9401 | 19.1964 | 80.6408 | 578 | 1125 | 602 | 2534 | 12 | 0.4736 | |
| ltrigg-rtg1 | SNP | ti | HG002compoundhet | hetalt | 99.9136 | 99.8273 | 100.0000 | 20.9016 | 578 | 1 | 579 | 0 | 0 | ||
| jli-custom | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 22.4462 | 577 | 2 | 577 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3971 | 98.8014 | 100.0000 | 18.3616 | 577 | 7 | 578 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 22.2372 | 577 | 2 | 577 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3971 | 98.8014 | 100.0000 | 18.5915 | 577 | 7 | 578 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | * | hetalt | 98.9708 | 99.1409 | 98.8014 | 49.0846 | 577 | 5 | 577 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 69.9400 | 54.1784 | 98.6348 | 79.3006 | 577 | 488 | 578 | 8 | 7 | 87.5000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | het | 83.8663 | 72.7617 | 98.9708 | 93.0529 | 577 | 216 | 577 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | het | 96.3955 | 97.6311 | 95.1907 | 86.7502 | 577 | 14 | 574 | 29 | 2 | 6.8966 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | het | 93.6867 | 98.2964 | 89.4900 | 93.6438 | 577 | 10 | 579 | 68 | 2 | 2.9412 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3971 | 98.8014 | 100.0000 | 18.5915 | 577 | 7 | 578 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 69.5601 | 72.7617 | 66.6284 | 86.3856 | 577 | 216 | 581 | 291 | 251 | 86.2543 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 46.0775 | 80.1389 | 32.3344 | 77.7959 | 577 | 143 | 615 | 1287 | 33 | 2.5641 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 79.5482 | 67.3279 | 97.1883 | 91.0248 | 577 | 280 | 795 | 23 | 11 | 47.8261 | |
| astatham-gatk | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 21.9215 | 577 | 2 | 577 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | homalt | 84.9635 | 75.6225 | 96.9372 | 90.0183 | 577 | 186 | 633 | 20 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 21.4966 | 577 | 2 | 577 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 22.4462 | 577 | 2 | 577 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 22.7577 | 577 | 2 | 577 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 22.5503 | 577 | 2 | 577 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 61.4859 | 44.5131 | 99.3789 | 49.1043 | 576 | 718 | 480 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | SNP | ti | HG002compoundhet | hetalt | 99.7403 | 99.4819 | 100.0000 | 21.4966 | 576 | 3 | 577 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | het | 86.9907 | 98.1261 | 78.1250 | 92.7637 | 576 | 11 | 575 | 161 | 28 | 17.3913 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 23.7409 | 20.8999 | 27.4757 | 50.6350 | 576 | 2180 | 566 | 1494 | 1477 | 98.8621 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 72.2264 | 69.9029 | 74.7097 | 69.5601 | 576 | 248 | 579 | 196 | 192 | 97.9592 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e1 | homalt | 95.8403 | 92.9032 | 98.9691 | 78.1695 | 576 | 44 | 576 | 6 | 2 | 33.3333 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3103 | 98.6301 | 100.0000 | 25.8312 | 576 | 8 | 580 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.9133 | 100.0000 | 99.8267 | 69.4709 | 576 | 0 | 576 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | HG002compoundhet | hetalt | 0.0000 | 99.4819 | 0.0000 | 0.0000 | 576 | 3 | 0 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | HG002compoundhet | hetalt | 99.7403 | 99.4819 | 100.0000 | 21.8453 | 576 | 3 | 576 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | het | 84.5932 | 97.4619 | 74.7264 | 88.6901 | 576 | 15 | 751 | 254 | 66 | 25.9843 | |
| ghariani-varprowl | INDEL | I16_PLUS | HG002complexvar | het | 78.0918 | 86.6165 | 71.0947 | 66.0117 | 576 | 89 | 578 | 235 | 228 | 97.0213 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | homalt | 95.2066 | 92.9032 | 97.6271 | 78.5766 | 576 | 44 | 576 | 14 | 2 | 14.2857 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.5360 | 94.4171 | 98.7522 | 73.2347 | 575 | 34 | 554 | 7 | 4 | 57.1429 | |
| qzeng-custom | INDEL | * | map_l125_m2_e1 | homalt | 83.8858 | 74.2894 | 96.3291 | 86.5211 | 575 | 199 | 761 | 29 | 11 | 37.9310 | |
| jlack-gatk | SNP | ti | HG002compoundhet | hetalt | 99.6534 | 99.3092 | 100.0000 | 21.8750 | 575 | 4 | 575 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2235 | 98.4589 | 100.0000 | 19.2146 | 575 | 9 | 576 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 65.1258 | 48.6464 | 98.4906 | 44.0338 | 575 | 607 | 522 | 8 | 6 | 75.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 96.7204 | 94.1080 | 99.4819 | 84.5641 | 575 | 36 | 576 | 3 | 1 | 33.3333 | |