PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23301-23350 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 90.6947 | 87.3874 | 94.2623 | 81.0323 | 582 | 84 | 575 | 35 | 32 | 91.4286 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 90.6947 | 87.3874 | 94.2623 | 81.0323 | 582 | 84 | 575 | 35 | 32 | 91.4286 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 97.9819 | 98.4772 | 97.4916 | 87.0169 | 582 | 9 | 583 | 15 | 2 | 13.3333 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8285 | 99.6575 | 100.0000 | 18.5754 | 582 | 2 | 583 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | * | hetalt | 99.5363 | 99.8282 | 99.2460 | 38.4448 | 581 | 1 | 6450 | 49 | 47 | 95.9184 | |
| gduggal-bwafb | SNP | ti | * | hetalt | 99.7425 | 99.8282 | 99.6569 | 53.0218 | 581 | 1 | 581 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | HG002compoundhet | homalt | 22.9146 | 84.6939 | 13.2497 | 72.0594 | 581 | 105 | 581 | 3804 | 3669 | 96.4511 | |
| ltrigg-rtg1 | SNP | ti | * | hetalt | 99.0637 | 99.8282 | 98.3108 | 41.4441 | 581 | 1 | 582 | 10 | 10 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l250_m2_e0 | homalt | 76.0969 | 62.0064 | 98.4746 | 89.6799 | 581 | 356 | 581 | 9 | 9 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l150_m2_e0 | het | 77.6228 | 64.1280 | 98.3108 | 92.5120 | 581 | 325 | 582 | 10 | 4 | 40.0000 | |
| ckim-dragen | SNP | ti | * | hetalt | 99.1507 | 99.8282 | 98.4823 | 48.3899 | 581 | 1 | 584 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | * | hetalt | 99.4012 | 99.8282 | 98.9779 | 50.2542 | 581 | 1 | 581 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | SNP | ti | * | hetalt | 78.4605 | 99.8282 | 64.6274 | 61.2500 | 581 | 1 | 581 | 318 | 23 | 7.2327 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 50.2132 | 87.3684 | 35.2307 | 72.3584 | 581 | 84 | 588 | 1081 | 1065 | 98.5199 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7425 | 99.4863 | 100.0000 | 18.9415 | 581 | 3 | 582 | 0 | 0 | ||
| astatham-gatk | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 39.9586 | 580 | 2 | 580 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.8920 | 97.9730 | 99.8285 | 75.6067 | 580 | 12 | 582 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | homalt | 97.2307 | 94.9264 | 99.6497 | 75.8051 | 580 | 31 | 569 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 33.7995 | 27.2556 | 44.4783 | 55.2641 | 580 | 1548 | 584 | 729 | 693 | 95.0617 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 84.0574 | 73.1400 | 98.8060 | 22.4537 | 580 | 213 | 331 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 45.8022 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.3714 | 96.1857 | 98.5866 | 71.6148 | 580 | 23 | 558 | 8 | 4 | 50.0000 | |
| hfeng-pmm1 | SNP | ti | * | hetalt | 99.5708 | 99.6564 | 99.4854 | 47.7130 | 580 | 2 | 580 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 47.9821 | 580 | 2 | 580 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 41.2361 | 580 | 2 | 580 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2099 | 94.9264 | 93.5043 | 70.1531 | 580 | 31 | 547 | 38 | 36 | 94.7368 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.4888 | 94.9264 | 98.1034 | 64.0867 | 580 | 31 | 569 | 11 | 9 | 81.8182 | |
| jli-custom | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 42.8150 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5710 | 99.3151 | 99.8282 | 17.5637 | 580 | 4 | 581 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.3322 | 95.2381 | 97.4518 | 62.1184 | 580 | 29 | 1415 | 37 | 32 | 86.4865 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 99.3151 | 0.0000 | 0.0000 | 580 | 4 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.2865 | 96.1857 | 98.4127 | 70.2674 | 580 | 23 | 558 | 9 | 5 | 55.5556 | |
| raldana-dualsentieon | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 37.7278 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5701 | 99.1438 | 100.0000 | 17.6136 | 579 | 5 | 580 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 54.1881 | 37.8431 | 95.3871 | 85.0345 | 579 | 951 | 579 | 28 | 21 | 75.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 54.1881 | 37.8431 | 95.3871 | 85.0345 | 579 | 951 | 579 | 28 | 21 | 75.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | het | 98.0166 | 97.9695 | 98.0636 | 83.8904 | 579 | 12 | 709 | 14 | 4 | 28.5714 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.8792 | 96.0199 | 97.7540 | 64.3266 | 579 | 24 | 914 | 21 | 15 | 71.4286 | |
| bgallagher-sentieon | SNP | ti | * | hetalt | 99.7416 | 99.4845 | 100.0000 | 40.0000 | 579 | 3 | 579 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5701 | 99.1438 | 100.0000 | 25.7325 | 579 | 5 | 583 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l250_m0_e0 | * | 40.4330 | 27.1194 | 79.4239 | 82.2628 | 579 | 1556 | 579 | 150 | 132 | 88.0000 | |
| ltrigg-rtg2 | SNP | ti | * | hetalt | 99.1449 | 99.4845 | 98.8075 | 41.3000 | 579 | 3 | 580 | 7 | 7 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5701 | 99.1438 | 100.0000 | 18.1946 | 579 | 5 | 580 | 0 | 0 | ||
| cchapple-custom | SNP | ti | * | hetalt | 0.0000 | 99.4845 | 0.0000 | 0.0000 | 579 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.6333 | 97.6351 | 99.6522 | 79.5374 | 578 | 14 | 573 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 41.2863 | 29.3252 | 69.7259 | 75.3742 | 578 | 1393 | 585 | 254 | 203 | 79.9213 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 41.2863 | 29.3252 | 69.7259 | 75.3742 | 578 | 1393 | 585 | 254 | 203 | 79.9213 | |
| ckim-dragen | SNP | ti | HG002compoundhet | hetalt | 99.9136 | 99.8273 | 100.0000 | 21.5739 | 578 | 1 | 578 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 94.0508 | 90.1716 | 98.2788 | 45.2919 | 578 | 63 | 571 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | SNP | ti | HG002compoundhet | hetalt | 99.9136 | 99.8273 | 100.0000 | 23.3422 | 578 | 1 | 578 | 0 | 0 | ||