PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23251-23300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 55.8170 | 81.7294 | 42.3803 | 38.8099 | 586 | 131 | 584 | 794 | 776 | 97.7330 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.5006 | 95.9083 | 87.4802 | 71.8304 | 586 | 25 | 552 | 79 | 77 | 97.4684 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3992 | 97.1808 | 99.6485 | 64.4597 | 586 | 17 | 567 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | het | 98.7377 | 99.1540 | 98.3250 | 82.6403 | 586 | 5 | 587 | 10 | 1 | 10.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | * | 82.3612 | 70.6024 | 98.8196 | 86.4457 | 586 | 244 | 586 | 7 | 2 | 28.5714 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 63.4096 | 46.8051 | 98.2726 | 36.6180 | 586 | 666 | 512 | 9 | 6 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.9030 | 98.9865 | 98.8196 | 81.4803 | 586 | 6 | 586 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.3483 | 92.8571 | 95.8882 | 60.8247 | 585 | 45 | 583 | 25 | 20 | 80.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.3441 | 90.1387 | 94.6602 | 59.6342 | 585 | 64 | 585 | 33 | 29 | 87.8788 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 81.0781 | 72.2222 | 92.4092 | 89.7647 | 585 | 225 | 840 | 69 | 13 | 18.8406 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.9803 | 97.1761 | 94.8136 | 51.0706 | 585 | 17 | 585 | 32 | 31 | 96.8750 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.7687 | 94.9675 | 98.6395 | 64.7059 | 585 | 31 | 580 | 8 | 8 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m0_e0 | het | 97.9106 | 98.9848 | 96.8595 | 86.1143 | 585 | 6 | 586 | 19 | 2 | 10.5263 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.9391 | 95.7447 | 88.4244 | 72.2445 | 585 | 26 | 550 | 72 | 67 | 93.0556 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1521 | 98.8176 | 99.4889 | 84.7770 | 585 | 7 | 584 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.2366 | 98.8176 | 99.6593 | 81.5176 | 585 | 7 | 585 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 24.2608 | 21.2264 | 28.3074 | 52.9088 | 585 | 2171 | 582 | 1474 | 1470 | 99.7286 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 74.3375 | 67.6709 | 82.4611 | 55.4224 | 584 | 279 | 583 | 124 | 122 | 98.3871 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.2239 | 97.0100 | 69.8565 | 48.4904 | 584 | 18 | 584 | 252 | 251 | 99.6032 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.5803 | 98.8156 | 96.3756 | 85.7277 | 584 | 7 | 585 | 22 | 1 | 4.5455 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.2142 | 96.8491 | 97.5820 | 71.1510 | 584 | 19 | 565 | 14 | 5 | 35.7143 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1511 | 98.6486 | 99.6587 | 83.2763 | 584 | 8 | 584 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 38.6951 | 60.3306 | 28.4813 | 61.2448 | 584 | 384 | 587 | 1474 | 1454 | 98.6431 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 94.1262 | 98.8156 | 89.8618 | 90.2908 | 584 | 7 | 585 | 66 | 3 | 4.5455 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1508 | 98.6486 | 99.6581 | 83.0336 | 584 | 8 | 583 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 91.3204 | 98.6464 | 85.0073 | 89.4535 | 583 | 8 | 584 | 103 | 5 | 4.8544 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1497 | 98.4797 | 99.8288 | 81.5598 | 583 | 9 | 583 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | homalt | 97.4137 | 98.4797 | 96.3705 | 85.1515 | 583 | 9 | 770 | 29 | 24 | 82.7586 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 37.1380 | 22.9618 | 97.0630 | 40.4691 | 583 | 1956 | 1355 | 41 | 41 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | homalt | 95.3393 | 92.6868 | 98.1481 | 96.7438 | 583 | 46 | 583 | 11 | 5 | 45.4545 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | homalt | 84.7865 | 75.3230 | 96.9697 | 90.1183 | 583 | 191 | 640 | 20 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0025 | 80.9722 | 94.0032 | 86.2919 | 583 | 137 | 580 | 37 | 5 | 13.5135 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 88.3102 | 87.5375 | 89.0966 | 84.7216 | 583 | 83 | 572 | 70 | 42 | 60.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 88.3102 | 87.5375 | 89.0966 | 84.7216 | 583 | 83 | 572 | 70 | 42 | 60.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 96.6837 | 94.0323 | 99.4889 | 84.6255 | 583 | 37 | 584 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.7178 | 94.6429 | 96.8174 | 68.4294 | 583 | 33 | 578 | 19 | 17 | 89.4737 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 87.5391 | 79.3197 | 97.6589 | 50.7414 | 583 | 152 | 584 | 14 | 14 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 94.5649 | 98.4772 | 90.9516 | 90.5332 | 582 | 9 | 583 | 58 | 3 | 5.1724 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | het | 98.1450 | 98.4772 | 97.8151 | 83.8007 | 582 | 9 | 582 | 13 | 3 | 23.0769 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 85.0239 | 76.2779 | 96.0352 | 93.3503 | 582 | 181 | 654 | 27 | 23 | 85.1852 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.7383 | 95.2537 | 98.2699 | 61.6457 | 582 | 29 | 568 | 10 | 9 | 90.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | het | 89.9509 | 98.4772 | 82.7834 | 89.5125 | 582 | 9 | 577 | 120 | 17 | 14.1667 | |
| ciseli-custom | INDEL | * | map_l150_m2_e1 | het | 67.0194 | 62.9870 | 71.6034 | 93.6172 | 582 | 342 | 585 | 232 | 136 | 58.6207 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.9630 | 95.2537 | 80.0000 | 69.7438 | 582 | 29 | 548 | 137 | 132 | 96.3504 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.5435 | 96.5174 | 98.5915 | 71.2841 | 582 | 21 | 560 | 8 | 4 | 50.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7137 | 96.5174 | 98.9399 | 71.3273 | 582 | 21 | 560 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | het | 89.8148 | 98.4772 | 82.5532 | 89.6186 | 582 | 9 | 582 | 123 | 22 | 17.8862 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.6449 | 98.3108 | 98.9813 | 86.6742 | 582 | 10 | 583 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8285 | 99.6575 | 100.0000 | 18.1180 | 582 | 2 | 583 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8285 | 99.6575 | 100.0000 | 18.3473 | 582 | 2 | 583 | 0 | 0 | ||