PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23001-23050 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 74.5086 | 80.7087 | 69.1932 | 71.0477 | 615 | 147 | 849 | 378 | 216 | 57.1429 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.8486 | 95.7878 | 100.0000 | 40.6160 | 614 | 27 | 617 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.6211 | 94.4615 | 98.8818 | 35.5967 | 614 | 36 | 619 | 7 | 6 | 85.7143 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.3185 | 93.1715 | 99.6855 | 68.3267 | 614 | 45 | 634 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3185 | 93.1715 | 99.6855 | 68.3267 | 614 | 45 | 634 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 95.7878 | 0.0000 | 0.0000 | 614 | 27 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 87.8398 | 78.3163 | 100.0000 | 38.0563 | 614 | 170 | 682 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.9525 | 99.0323 | 98.8728 | 82.5169 | 614 | 6 | 614 | 7 | 6 | 85.7143 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.3190 | 93.1715 | 99.6865 | 67.9236 | 614 | 45 | 636 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3190 | 93.1715 | 99.6865 | 67.9236 | 614 | 45 | 636 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 87.1648 | 79.0219 | 97.1787 | 89.3631 | 614 | 163 | 620 | 18 | 2 | 11.1111 | |
| anovak-vg | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 39.1152 | 33.2790 | 47.4335 | 60.0049 | 613 | 1229 | 767 | 850 | 647 | 76.1176 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | het | 80.8118 | 71.6959 | 92.5834 | 95.0292 | 613 | 242 | 749 | 60 | 29 | 48.3333 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m1_e0 | het | 81.0099 | 78.8932 | 83.2432 | 92.8928 | 613 | 164 | 616 | 124 | 3 | 2.4194 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.7671 | 95.6318 | 100.0000 | 40.4831 | 613 | 28 | 616 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.2713 | 98.8710 | 99.6748 | 82.3782 | 613 | 7 | 613 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.2865 | 92.5982 | 98.1356 | 76.2957 | 613 | 49 | 579 | 11 | 8 | 72.7273 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6856 | 95.4758 | 100.0000 | 42.8172 | 612 | 29 | 613 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6856 | 95.4758 | 100.0000 | 43.1608 | 612 | 29 | 615 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.1896 | 98.7097 | 99.6743 | 83.9687 | 612 | 8 | 612 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | map_siren | homalt | 62.7683 | 50.4950 | 82.9235 | 77.4631 | 612 | 600 | 607 | 125 | 97 | 77.6000 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.1894 | 98.7097 | 99.6737 | 83.7831 | 612 | 8 | 611 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6856 | 95.4758 | 100.0000 | 40.5222 | 612 | 29 | 615 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.1883 | 98.5484 | 99.8366 | 82.3580 | 611 | 9 | 611 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6038 | 95.3198 | 100.0000 | 41.4681 | 611 | 30 | 614 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.9735 | 92.2961 | 93.6609 | 72.5054 | 611 | 51 | 591 | 40 | 14 | 35.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6585 | 93.5681 | 91.7665 | 71.7189 | 611 | 42 | 613 | 55 | 44 | 80.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.9468 | 98.5484 | 99.3485 | 85.4812 | 611 | 9 | 610 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 29.8387 | 20.4965 | 54.8298 | 62.6973 | 611 | 2370 | 596 | 491 | 477 | 97.1487 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | homalt | 97.3013 | 98.5484 | 96.0854 | 85.4680 | 611 | 9 | 810 | 33 | 27 | 81.8182 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7564 | 96.8254 | 98.7055 | 66.0626 | 610 | 20 | 610 | 8 | 5 | 62.5000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6472 | 93.4150 | 91.8919 | 71.8393 | 610 | 43 | 612 | 54 | 41 | 75.9259 | |
| astatham-gatk | SNP | * | map_l250_m0_e0 | homalt | 97.9920 | 96.9793 | 99.0260 | 91.4528 | 610 | 19 | 610 | 6 | 5 | 83.3333 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | * | 83.7200 | 78.4062 | 89.8065 | 94.3591 | 610 | 168 | 696 | 79 | 18 | 22.7848 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.1855 | 22.9755 | 36.4514 | 63.8922 | 610 | 2045 | 982 | 1712 | 1115 | 65.1285 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6000 | 96.8254 | 98.3871 | 66.3227 | 610 | 20 | 610 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7564 | 96.8254 | 98.7055 | 66.0440 | 610 | 20 | 610 | 8 | 2 | 25.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6802 | 96.8254 | 96.5354 | 62.6690 | 610 | 20 | 613 | 22 | 7 | 31.8182 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 82.5807 | 86.7710 | 78.7765 | 37.6168 | 610 | 93 | 631 | 170 | 95 | 55.8824 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 93.8462 | 0.0000 | 0.0000 | 610 | 40 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 56.7644 | 80.9840 | 43.6963 | 58.5880 | 609 | 143 | 610 | 786 | 670 | 85.2417 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.4790 | 92.6941 | 71.1085 | 79.3774 | 609 | 48 | 603 | 245 | 24 | 9.7959 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 74.7226 | 73.9078 | 75.5556 | 71.1230 | 609 | 215 | 612 | 198 | 191 | 96.4646 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | * | 82.6884 | 71.0618 | 98.8636 | 87.6156 | 609 | 248 | 609 | 7 | 2 | 28.5714 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3475 | 99.6727 | 99.0244 | 83.2288 | 609 | 2 | 609 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 58.2480 | 73.8182 | 48.1020 | 32.1234 | 609 | 216 | 1736 | 1873 | 1859 | 99.2525 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 58.2480 | 73.8182 | 48.1020 | 32.1234 | 609 | 216 | 1736 | 1873 | 1859 | 99.2525 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 58.9260 | 45.7207 | 82.8571 | 79.6003 | 609 | 723 | 609 | 126 | 21 | 16.6667 | |