PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2251-2300 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | * | map_l150_m1_e0 | * | 99.4475 | 99.3825 | 99.5125 | 74.0748 | 30420 | 189 | 30414 | 149 | 23 | 15.4362 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | * | 99.5907 | 99.5093 | 99.6723 | 71.0190 | 30419 | 150 | 30415 | 100 | 16 | 16.0000 | |
| hfeng-pmm2 | SNP | * | map_l150_m1_e0 | * | 99.2283 | 99.3662 | 99.0908 | 76.3631 | 30415 | 194 | 30409 | 279 | 34 | 12.1864 | |
| hfeng-pmm2 | SNP | ti | map_l125_m2_e1 | * | 99.4245 | 99.4799 | 99.3693 | 73.2743 | 30410 | 159 | 30406 | 193 | 23 | 11.9171 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.9331 | 96.8097 | 99.0829 | 51.7183 | 30406 | 1002 | 31224 | 289 | 257 | 88.9273 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.9331 | 96.8097 | 99.0829 | 51.7183 | 30406 | 1002 | 31224 | 289 | 257 | 88.9273 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3659 | 98.8427 | 99.8947 | 68.5558 | 30405 | 356 | 30350 | 32 | 26 | 81.2500 | |
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | * | 99.1019 | 99.3303 | 98.8746 | 75.7599 | 30404 | 205 | 30398 | 346 | 61 | 17.6301 | |
| bgallagher-sentieon | SNP | ti | map_l125_m2_e1 | * | 99.3333 | 99.4373 | 99.2295 | 72.6907 | 30397 | 172 | 30393 | 236 | 42 | 17.7966 | |
| ckim-dragen | SNP | ti | map_l100_m2_e0 | het | 98.1149 | 99.2554 | 97.0004 | 73.1660 | 30394 | 228 | 30397 | 940 | 87 | 9.2553 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | het | 96.4036 | 99.2424 | 93.7226 | 78.7202 | 30390 | 232 | 30383 | 2035 | 176 | 8.6487 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1330 | 96.7301 | 99.5772 | 56.3405 | 30381 | 1027 | 30382 | 129 | 103 | 79.8450 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1330 | 96.7301 | 99.5772 | 56.3405 | 30381 | 1027 | 30382 | 129 | 103 | 79.8450 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0894 | 96.6856 | 99.5346 | 57.0832 | 30367 | 1041 | 30368 | 142 | 126 | 88.7324 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0894 | 96.6856 | 99.5346 | 57.0832 | 30367 | 1041 | 30368 | 142 | 126 | 88.7324 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | het | 98.9153 | 98.0846 | 99.7602 | 53.1134 | 30367 | 593 | 30370 | 73 | 6 | 8.2192 | |
| dgrover-gatk | SNP | ti | map_l125_m2_e1 | * | 99.3781 | 99.3327 | 99.4236 | 73.9461 | 30365 | 204 | 30361 | 176 | 42 | 23.8636 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | het | 97.4111 | 98.0685 | 96.7625 | 68.1401 | 30362 | 598 | 30366 | 1016 | 436 | 42.9134 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e0 | het | 99.3487 | 99.1444 | 99.5539 | 65.6465 | 30360 | 262 | 30352 | 136 | 82 | 60.2941 | |
| jli-custom | SNP | ti | map_l100_m2_e0 | het | 99.3179 | 99.1411 | 99.4953 | 64.3096 | 30359 | 263 | 30357 | 154 | 38 | 24.6753 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | het | 99.0553 | 99.1379 | 98.9728 | 67.5282 | 30358 | 264 | 30351 | 315 | 6 | 1.9048 | |
| dgrover-gatk | SNP | * | map_l150_m1_e0 | * | 99.1521 | 99.1473 | 99.1569 | 77.1188 | 30348 | 261 | 30342 | 258 | 59 | 22.8682 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | het | 98.1558 | 99.0660 | 97.2621 | 74.0240 | 30336 | 286 | 30338 | 854 | 157 | 18.3841 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e0 | het | 99.3987 | 99.0660 | 99.7336 | 64.8032 | 30336 | 286 | 30329 | 81 | 20 | 24.6914 | |
| hfeng-pmm1 | SNP | * | map_l150_m1_e0 | * | 99.3336 | 99.1016 | 99.5666 | 73.6726 | 30334 | 275 | 30328 | 132 | 37 | 28.0303 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e1 | * | 99.4622 | 99.2247 | 99.7008 | 70.5014 | 30332 | 237 | 30328 | 91 | 25 | 27.4725 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0742 | 96.5582 | 99.6386 | 56.1134 | 30327 | 1081 | 30328 | 110 | 94 | 85.4545 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0742 | 96.5582 | 99.6386 | 56.1134 | 30327 | 1081 | 30328 | 110 | 94 | 85.4545 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | * | 99.1254 | 99.1822 | 99.0686 | 71.0811 | 30319 | 250 | 30315 | 285 | 11 | 3.8597 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | het | 98.8152 | 98.9975 | 98.6336 | 70.5993 | 30315 | 307 | 30317 | 420 | 95 | 22.6190 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | het | 99.3933 | 98.9779 | 99.8123 | 65.4669 | 30309 | 313 | 30310 | 57 | 18 | 31.5789 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.7280 | 96.4818 | 99.0068 | 57.7386 | 30303 | 1105 | 30303 | 304 | 291 | 95.7237 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.7280 | 96.4818 | 99.0068 | 57.7386 | 30303 | 1105 | 30303 | 304 | 291 | 95.7237 | |
| jli-custom | SNP | ti | map_l125_m2_e1 | * | 99.3704 | 99.1266 | 99.6153 | 68.7864 | 30302 | 267 | 30300 | 117 | 41 | 35.0427 | |
| ckim-dragen | SNP | ti | map_l125_m2_e1 | * | 98.4185 | 99.1233 | 97.7236 | 74.4858 | 30301 | 268 | 30308 | 706 | 81 | 11.4731 | |
| jpowers-varprowl | INDEL | I1_5 | HG002complexvar | * | 92.7158 | 90.8192 | 94.6934 | 52.3150 | 30300 | 3063 | 30175 | 1691 | 1600 | 94.6186 | |
| raldana-dualsentieon | SNP | * | map_l150_m1_e0 | * | 98.9484 | 98.9905 | 98.9063 | 73.9052 | 30300 | 309 | 30294 | 335 | 11 | 3.2836 | |
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | * | 99.4698 | 99.1135 | 99.8287 | 70.7805 | 30298 | 271 | 30298 | 52 | 24 | 46.1538 | |
| rpoplin-dv42 | SNP | ti | map_l125_m2_e1 | * | 99.3100 | 99.1069 | 99.5138 | 70.8133 | 30296 | 273 | 30292 | 148 | 102 | 68.9189 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | het | 73.0648 | 65.5393 | 82.5428 | 64.5149 | 30287 | 15925 | 32942 | 6967 | 459 | 6.5882 | |
| cchapple-custom | SNP | ti | map_l100_m2_e1 | het | 97.1612 | 97.8036 | 96.5271 | 73.0715 | 30280 | 680 | 30296 | 1090 | 274 | 25.1376 | |
| egarrison-hhga | SNP | * | map_l150_m1_e0 | * | 99.3388 | 98.9023 | 99.7792 | 73.2772 | 30273 | 336 | 30273 | 67 | 32 | 47.7612 | |
| ckim-dragen | SNP | * | map_l150_m1_e0 | * | 98.2024 | 98.8631 | 97.5505 | 76.7332 | 30261 | 348 | 30267 | 760 | 93 | 12.2368 | |
| rpoplin-dv42 | SNP | * | map_l150_m1_e0 | * | 99.0457 | 98.8533 | 99.2389 | 73.2840 | 30258 | 351 | 30252 | 232 | 150 | 64.6552 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | * | 93.8573 | 92.4805 | 95.2757 | 55.2360 | 30255 | 2460 | 30130 | 1494 | 1377 | 92.1687 | |
| jli-custom | SNP | * | map_l150_m1_e0 | * | 99.1511 | 98.8337 | 99.4706 | 71.1384 | 30252 | 357 | 30249 | 161 | 58 | 36.0248 | |
| gduggal-bwavard | INDEL | I1_5 | HG002complexvar | * | 92.2209 | 90.6273 | 93.8716 | 50.7362 | 30236 | 3127 | 29241 | 1909 | 1668 | 87.3756 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1875 | 96.2685 | 98.1242 | 59.9927 | 30236 | 1172 | 30236 | 578 | 510 | 88.2353 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1875 | 96.2685 | 98.1242 | 59.9927 | 30236 | 1172 | 30236 | 578 | 510 | 88.2353 | |
| jlack-gatk | SNP | ti | map_l125_m2_e1 | * | 96.7790 | 98.8910 | 94.7553 | 79.7616 | 30230 | 339 | 30226 | 1673 | 151 | 9.0257 | |