PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
21401-21450 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I16_PLUS | HG002complexvar | * | 64.0905 | 62.4141 | 65.8596 | 60.8283 | 817 | 492 | 816 | 423 | 292 | 69.0307 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.2502 | 89.3757 | 77.9104 | 89.9920 | 816 | 97 | 783 | 222 | 70 | 31.5315 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1495 | 99.0291 | 99.2701 | 69.1789 | 816 | 8 | 816 | 6 | 1 | 16.6667 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7893 | 99.0291 | 98.5507 | 71.3594 | 816 | 8 | 816 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 73.8957 | 69.0940 | 79.4146 | 45.3333 | 816 | 365 | 814 | 211 | 209 | 99.0521 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 72.7873 | 95.7746 | 58.6987 | 85.9415 | 816 | 36 | 830 | 584 | 143 | 24.4863 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | * | 94.2808 | 95.2159 | 93.3638 | 89.9679 | 816 | 41 | 816 | 58 | 21 | 36.2069 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | het | 96.9158 | 95.4386 | 98.4394 | 87.9118 | 816 | 39 | 820 | 13 | 1 | 7.6923 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 30.4251 | 0.0000 | 0.0000 | 816 | 1866 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 96.2844 | 93.7931 | 98.9117 | 88.0681 | 816 | 54 | 818 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | I1_5 | HG002compoundhet | het | 93.5851 | 96.0000 | 91.2888 | 86.8239 | 816 | 34 | 765 | 73 | 70 | 95.8904 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.4614 | 84.9116 | 51.9498 | 59.0528 | 816 | 145 | 786 | 727 | 719 | 98.8996 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.3146 | 95.6573 | 99.0303 | 86.2431 | 815 | 37 | 817 | 8 | 8 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.6785 | 95.6573 | 97.7218 | 80.9284 | 815 | 37 | 815 | 19 | 14 | 73.6842 | |
| asubramanian-gatk | SNP | * | HG002compoundhet | hetalt | 95.0437 | 94.5476 | 95.5451 | 26.8439 | 815 | 47 | 815 | 38 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | HG002compoundhet | hetalt | 95.8824 | 94.5476 | 97.2554 | 25.0447 | 815 | 47 | 815 | 23 | 0 | 0.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.4177 | 95.2047 | 95.6316 | 62.5883 | 814 | 41 | 810 | 37 | 17 | 45.9459 | |
| mlin-fermikit | SNP | * | HG002compoundhet | hetalt | 97.1360 | 94.4316 | 100.0000 | 20.8171 | 814 | 48 | 814 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | HG002compoundhet | hetalt | 97.1360 | 94.4316 | 100.0000 | 20.8171 | 814 | 48 | 814 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2683 | 98.7864 | 99.7549 | 68.4699 | 814 | 10 | 814 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.6079 | 98.0723 | 99.1495 | 84.7395 | 814 | 16 | 816 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | D16_PLUS | HG002complexvar | het | 76.6298 | 73.5321 | 80.0000 | 57.0120 | 814 | 293 | 488 | 122 | 28 | 22.9508 | |
| ghariani-varprowl | INDEL | I16_PLUS | HG002complexvar | * | 68.3069 | 62.1849 | 75.7660 | 65.1794 | 814 | 495 | 816 | 261 | 254 | 97.3180 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | * | 84.1360 | 92.1769 | 77.3854 | 90.1890 | 813 | 69 | 1249 | 365 | 97 | 26.5753 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m1_e0 | het | 96.9589 | 95.0877 | 98.9051 | 82.3832 | 813 | 42 | 813 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e0 | * | 94.3414 | 94.8658 | 93.8228 | 88.8990 | 813 | 44 | 805 | 53 | 23 | 43.3962 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.3833 | 95.4225 | 89.5317 | 74.6685 | 813 | 39 | 650 | 76 | 31 | 40.7895 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m0_e0 | het | 92.9143 | 87.0450 | 99.6324 | 79.6863 | 813 | 121 | 813 | 3 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | * | hetalt | 96.5558 | 93.3410 | 100.0000 | 30.0946 | 813 | 58 | 813 | 0 | 0 | ||
| ckim-isaac | SNP | tv | * | hetalt | 96.5558 | 93.3410 | 100.0000 | 30.0946 | 813 | 58 | 813 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9653 | 98.6650 | 99.2674 | 69.4858 | 813 | 11 | 813 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7849 | 98.6650 | 98.9051 | 68.7452 | 813 | 11 | 813 | 9 | 4 | 44.4444 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.4869 | 97.9518 | 99.0279 | 85.4026 | 813 | 17 | 815 | 8 | 3 | 37.5000 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | * | 58.1587 | 59.3567 | 57.0081 | 84.8215 | 812 | 556 | 846 | 638 | 455 | 71.3166 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.7867 | 95.4172 | 98.1962 | 86.7315 | 812 | 39 | 871 | 16 | 13 | 81.2500 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | homalt | 77.3702 | 63.3880 | 99.2665 | 77.2272 | 812 | 469 | 812 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | het | 76.7833 | 64.0379 | 95.8629 | 77.1351 | 812 | 456 | 811 | 35 | 19 | 54.2857 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | het | 42.7481 | 27.3585 | 97.7136 | 79.5371 | 812 | 2156 | 812 | 19 | 1 | 5.2632 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9558 | 94.9708 | 99.0256 | 50.8383 | 812 | 43 | 813 | 8 | 1 | 12.5000 | |
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | het | 94.8598 | 94.8538 | 94.8658 | 94.1088 | 811 | 44 | 813 | 44 | 4 | 9.0909 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | * | 98.0672 | 97.7108 | 98.4262 | 83.5622 | 811 | 19 | 813 | 13 | 1 | 7.6923 | |
| gduggal-bwaplat | INDEL | * | map_l150_m2_e1 | * | 71.8972 | 56.3586 | 99.2656 | 96.0740 | 811 | 628 | 811 | 6 | 1 | 16.6667 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 78.3824 | 64.7764 | 99.2239 | 34.3044 | 811 | 441 | 895 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 63.6010 | 58.1362 | 70.1998 | 85.9497 | 811 | 584 | 808 | 343 | 294 | 85.7143 | |
| cchapple-custom | INDEL | D6_15 | HG002compoundhet | het | 96.2282 | 94.6262 | 97.8854 | 30.8078 | 810 | 46 | 9860 | 213 | 202 | 94.8357 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 69.4308 | 85.9873 | 58.2206 | 70.8929 | 810 | 132 | 818 | 587 | 575 | 97.9557 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e0 | * | 90.3981 | 94.5158 | 86.6242 | 88.6067 | 810 | 47 | 1088 | 168 | 70 | 41.6667 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e0 | homalt | 33.1085 | 19.8384 | 100.0000 | 92.7263 | 810 | 3273 | 810 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.0166 | 98.1818 | 90.1905 | 68.4305 | 810 | 15 | 947 | 103 | 102 | 99.0291 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.0166 | 98.1818 | 90.1905 | 68.4305 | 810 | 15 | 947 | 103 | 102 | 99.0291 | |