PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
2001-2050 / 86044 show all
dgrover-gatkINDELD1_5HG002complexvar*
99.6498
99.5323
99.7675
58.6672
32562153326177666
86.8421
bgallagher-sentieonINDELD1_5HG002complexvar*
99.6177
99.4956
99.7400
58.4446
32550165326058576
89.4118
raldana-dualsentieonSNP*map_l100_m0_e0*
99.0621
99.0682
99.0561
67.1734
325353063253131012
3.8710
ckim-dragenINDELD1_5HG002complexvar*
99.5269
99.3917
99.6625
58.3864
325161993247811086
78.1818
astatham-gatkINDELD1_5HG002complexvar*
99.5714
99.3825
99.7611
58.5986
32513202325677866
84.6154
ckim-dragenSNP*map_l100_m0_e0*
98.2840
98.9495
97.6275
70.9502
324963453250879091
11.5190
ckim-gatkINDELD1_5HG002complexvar*
99.5163
99.3153
99.7181
58.5688
32491224325459272
78.2609
jlack-gatkINDELD1_5HG002complexvar*
99.4067
99.2878
99.5259
58.0276
324822333253915592
59.3548
egarrison-hhgaSNP*map_l100_m0_e0*
99.3454
98.8977
99.7972
67.0353
32479362324806633
50.0000
rpoplin-dv42SNP*map_l100_m0_e0*
99.0394
98.8947
99.1845
66.6640
3247836332474267146
54.6816
jli-customINDELD1_5HG002complexvar*
99.5191
99.2725
99.7668
57.5505
32477238325187659
77.6316
asubramanian-gatkSNP*map_l100_m2_e0*
60.9821
43.8984
99.8339
85.3165
3246941495324635414
25.9259
jli-customSNP*map_l100_m0_e0*
99.1662
98.8612
99.4730
63.5990
324673743246717259
34.3023
jmaeng-gatkINDELD1_5HG002complexvar*
99.4486
99.1930
99.7055
58.6476
32451264325059676
79.1667
ckim-vqsrINDELD1_5HG002complexvar*
99.4499
99.1625
99.7391
58.6120
32441274324948569
81.1765
rpoplin-dv42INDELD1_5HG002complexvar*
99.3660
99.1319
99.6013
57.4494
3243128432474130115
88.4615
gduggal-bwafbSNP*map_l100_m0_e0*
98.7063
98.7333
98.6792
70.9309
3242541632426434107
24.6544
jlack-gatkSNP*map_l100_m0_e0*
95.5864
98.6663
92.6930
78.0628
32403438323992554207
8.1049
ltrigg-rtg2INDELD1_5HG002complexvar*
99.1938
98.8812
99.5083
54.2253
3234936632179159100
62.8931
ghariani-varprowlSNP*map_l100_m0_e0*
97.6658
98.4806
96.8644
74.2691
32342499323441047227
21.6810
cchapple-customINDELD1_5HG002complexvar*
99.2131
98.7865
99.6433
53.2355
323183973128811296
85.7143
gduggal-bwafbINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.3040
97.2229
99.4094
71.0102
3231392338374228113
49.5614
ndellapenna-hhgaSNP*map_l100_m0_e0*
99.0308
98.3192
99.7529
65.5554
32289552322908041
51.2500
asubramanian-gatkINDELD1_5HG002complexvar*
99.2090
98.6948
99.7287
58.8075
32288427323478875
85.2273
ltrigg-rtg1INDELD1_5HG002complexvar*
99.1020
98.6275
99.5810
54.4390
322664493208813585
62.9630
jmaeng-gatkSNPtimap_sirenhomalt
91.9235
85.0855
99.9566
52.7056
322615655322551414
100.0000
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.1071
97.0183
99.2207
69.5547
3224599132847258171
66.2791
hfeng-pmm3INDELD1_5HG002complexvar*
99.2121
98.5267
99.9072
56.6840
32233482322853019
63.3333
ckim-vqsrSNPtvmap_siren*
82.2625
70.1676
99.3954
75.7194
3222813702322211967
3.5714
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50*
89.0060
88.0657
89.9667
48.3054
3222543673213735843498
97.6004
raldana-dualsentieonINDELD1_5HG002complexvar*
99.1616
98.5022
99.8299
57.5831
32225490322765541
74.5455
hfeng-pmm2INDELD1_5HG002complexvar*
99.1842
98.4778
99.9009
57.1533
32217498322683221
65.6250
hfeng-pmm1INDELD1_5HG002complexvar*
99.1888
98.4747
99.9133
56.8376
32216499322672818
64.2857
ckim-gatkSNPtimap_sirenhomalt
91.8305
84.9219
99.9627
53.3585
321995717321931211
91.6667
ltrigg-rtg1SNP*map_l100_m0_e0*
98.8943
98.0421
99.7614
58.2016
32198643322017723
29.8701
ckim-isaacSNP*map_l100_m2_e0het
81.8136
69.3420
99.7551
67.9608
3217414225321817912
15.1899
ckim-isaacINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.8145
96.7836
96.8455
61.4159
321671069317751035815
78.7440
gduggal-bwafbINDELI1_5HG002complexvar*
97.5502
96.2593
98.8762
54.2720
32115124832201366326
89.0710
eyeh-varpipeSNP*map_l150_m2_e1*
98.5942
99.6616
97.5494
78.9029
321011093116878330
3.8314
qzeng-customINDELD1_5HG002complexvar*
98.5796
98.0926
99.0713
54.7462
3209162432325303168
55.4455
ltrigg-rtg2SNP*map_l100_m0_e0*
98.7191
97.6280
99.8350
53.7664
3206277932065539
16.9811
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.7763
96.4226
95.1386
69.4450
3204711893201716361576
96.3325
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.2099
96.3623
73.2167
70.3492
320261209478611750814830
84.7041
hfeng-pmm3SNP*map_l150_m2_e1*
99.4641
99.4070
99.5212
75.5898
320191913201315423
14.9351
hfeng-pmm2SNP*map_l150_m2_e1*
99.2528
99.3946
99.1113
77.7651
320151953200928734
11.8467
gduggal-bwavardSNP*map_l100_m0_e0*
94.9074
97.4514
92.4929
77.7735
32004837316152566141
5.4949
bgallagher-sentieonSNP*map_l150_m2_e1*
99.1218
99.3542
98.8904
77.2353
320022083199635962
17.2702
ckim-isaacSNPtimap_l100_m1_e0*
80.0185
66.7647
99.8378
62.0110
3200115930320055210
19.2308
ckim-isaacSNPtvmap_siren*
81.9877
69.5646
99.8126
55.0084
3195113979319566025
41.6667
dgrover-gatkSNP*map_l150_m2_e1*
99.1741
99.1773
99.1710
78.4616
319452653193926760
22.4719