PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20401-20450 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.6521 | 97.7707 | 99.5495 | 74.2085 | 921 | 21 | 884 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 45.1028 | 77.9188 | 31.7367 | 57.3110 | 921 | 261 | 921 | 1981 | 1814 | 91.5699 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.8790 | 77.9848 | 93.1104 | 42.5160 | 921 | 260 | 919 | 68 | 68 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2146 | 97.6645 | 98.7709 | 74.8454 | 920 | 22 | 884 | 11 | 5 | 45.4545 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | * | 45.2311 | 31.9223 | 77.5717 | 80.1107 | 920 | 1962 | 920 | 266 | 237 | 89.0977 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.6788 | 73.4824 | 99.9005 | 31.7719 | 920 | 332 | 1004 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | map_l250_m2_e0 | homalt | 98.9247 | 98.1857 | 99.6750 | 89.2173 | 920 | 17 | 920 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | * | hetalt | 59.7317 | 43.8513 | 93.6441 | 57.0909 | 920 | 1178 | 221 | 15 | 15 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.0511 | 96.3351 | 97.7778 | 77.6754 | 920 | 35 | 924 | 21 | 18 | 85.7143 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4057 | 99.7831 | 99.0312 | 77.4842 | 920 | 2 | 920 | 9 | 6 | 66.6667 | |
| jlack-gatk | SNP | tv | map_l250_m2_e0 | homalt | 98.6581 | 98.0790 | 99.2441 | 87.2434 | 919 | 18 | 919 | 7 | 5 | 71.4286 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1065 | 97.5584 | 98.6607 | 74.2677 | 919 | 23 | 884 | 12 | 6 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1602 | 97.5584 | 98.7696 | 74.4425 | 919 | 23 | 883 | 11 | 5 | 45.4545 | |
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | homalt | 49.9321 | 33.2850 | 99.8913 | 89.4326 | 919 | 1842 | 919 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.5547 | 73.4026 | 99.7027 | 31.1263 | 919 | 333 | 1006 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1602 | 97.5584 | 98.7696 | 74.5081 | 919 | 23 | 883 | 11 | 5 | 45.4545 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4772 | 99.5662 | 99.3884 | 73.4002 | 918 | 4 | 975 | 6 | 4 | 66.6667 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4583 | 99.5662 | 99.3506 | 78.2639 | 918 | 4 | 918 | 6 | 3 | 50.0000 | |
| hfeng-pmm3 | SNP | ti | map_l250_m0_e0 | het | 98.2343 | 98.2869 | 98.1818 | 93.2251 | 918 | 16 | 918 | 17 | 1 | 5.8824 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | het | 97.6596 | 98.2869 | 97.0402 | 94.0240 | 918 | 16 | 918 | 28 | 3 | 10.7143 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | homalt | 98.2869 | 97.0402 | 99.5662 | 88.1078 | 918 | 28 | 918 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6005 | 95.5255 | 97.6999 | 63.9558 | 918 | 43 | 892 | 21 | 10 | 47.6190 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9557 | 99.5662 | 98.3527 | 76.9179 | 918 | 4 | 1015 | 17 | 6 | 35.2941 | |
| ckim-isaac | SNP | tv | map_l250_m2_e1 | het | 63.5294 | 46.7176 | 99.2432 | 92.2217 | 918 | 1047 | 918 | 7 | 1 | 14.2857 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6744 | 99.4583 | 99.8915 | 30.2044 | 918 | 5 | 921 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 78.5045 | 69.6510 | 89.9365 | 50.9342 | 918 | 400 | 992 | 111 | 111 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.8485 | 99.5662 | 85.2412 | 78.3800 | 918 | 4 | 901 | 156 | 95 | 60.8974 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5134 | 94.8347 | 94.1942 | 82.6140 | 918 | 50 | 941 | 58 | 19 | 32.7586 | |
| asubramanian-gatk | SNP | * | map_l250_m1_e0 | het | 32.3296 | 19.3060 | 99.3506 | 98.5655 | 918 | 3837 | 918 | 6 | 1 | 16.6667 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6744 | 99.4583 | 99.8915 | 29.8859 | 918 | 5 | 921 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 55.0866 | 65.0355 | 47.7778 | 51.5804 | 917 | 493 | 1376 | 1504 | 1123 | 74.6676 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.7448 | 77.6461 | 93.2722 | 41.8494 | 917 | 264 | 915 | 66 | 66 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.5497 | 95.4214 | 97.7049 | 66.6424 | 917 | 44 | 894 | 21 | 10 | 47.6190 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002compoundhet | hetalt | 60.2626 | 43.8127 | 96.4912 | 42.7136 | 917 | 1176 | 220 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 61.6323 | 46.5246 | 91.2698 | 88.3076 | 917 | 1054 | 920 | 88 | 9 | 10.2273 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 61.6323 | 46.5246 | 91.2698 | 88.3076 | 917 | 1054 | 920 | 88 | 9 | 10.2273 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.0513 | 97.3461 | 98.7668 | 74.5506 | 917 | 25 | 881 | 11 | 5 | 45.4545 | |
| egarrison-hhga | INDEL | D1_5 | HG002complexvar | hetalt | 79.1212 | 67.7515 | 95.0766 | 77.6746 | 916 | 436 | 869 | 45 | 42 | 93.3333 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.9472 | 94.6281 | 97.3036 | 80.6048 | 916 | 52 | 830 | 23 | 15 | 65.2174 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.8240 | 95.3174 | 83.1589 | 72.8494 | 916 | 45 | 874 | 177 | 168 | 94.9153 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5679 | 99.2416 | 99.8964 | 30.1737 | 916 | 7 | 964 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5654 | 99.2416 | 99.8913 | 28.9575 | 916 | 7 | 919 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.6799 | 92.3387 | 97.1429 | 70.2456 | 916 | 76 | 918 | 27 | 3 | 11.1111 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | homalt | 98.0718 | 96.8288 | 99.3471 | 88.1389 | 916 | 30 | 913 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.7458 | 94.6281 | 94.8637 | 60.4149 | 916 | 52 | 905 | 49 | 36 | 73.4694 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 92.3313 | 99.3492 | 86.2394 | 78.7375 | 916 | 6 | 915 | 146 | 129 | 88.3562 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5647 | 99.1333 | 100.0000 | 30.5303 | 915 | 8 | 917 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 79.0223 | 86.0771 | 73.0363 | 71.1846 | 915 | 148 | 1590 | 587 | 460 | 78.3646 | |
| anovak-vg | INDEL | * | map_l125_m1_e0 | het | 70.6166 | 68.5393 | 72.8236 | 88.9382 | 915 | 420 | 962 | 359 | 95 | 26.4624 | |
| astatham-gatk | SNP | tv | map_l250_m2_e0 | homalt | 98.5460 | 97.6521 | 99.4565 | 86.4046 | 915 | 22 | 915 | 5 | 4 | 80.0000 | |