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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20201-20250 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 90.3658 | 89.3697 | 91.3843 | 78.2572 | 950 | 113 | 944 | 89 | 83 | 93.2584 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3717 | 99.3717 | 99.3717 | 79.9201 | 949 | 6 | 949 | 6 | 5 | 83.3333 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0605 | 98.9572 | 99.1641 | 72.4921 | 949 | 10 | 949 | 8 | 6 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.1028 | 94.4279 | 95.7874 | 61.2966 | 949 | 56 | 955 | 42 | 40 | 95.2381 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e1 | homalt | 77.2097 | 74.0827 | 80.6122 | 81.1659 | 949 | 332 | 948 | 228 | 200 | 87.7193 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.7974 | 80.3556 | 85.3922 | 44.8533 | 949 | 232 | 947 | 162 | 161 | 99.3827 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.1975 | 80.3556 | 86.2477 | 45.5627 | 949 | 232 | 947 | 151 | 143 | 94.7020 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 33.8729 | 24.3264 | 55.7519 | 39.1474 | 948 | 2949 | 1735 | 1377 | 1147 | 83.2970 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0078 | 98.8530 | 99.1632 | 72.8794 | 948 | 11 | 948 | 8 | 6 | 75.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.6739 | 80.2710 | 85.2252 | 43.8259 | 948 | 233 | 946 | 164 | 164 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | het | 89.4513 | 85.6369 | 93.6214 | 62.1643 | 948 | 159 | 910 | 62 | 44 | 70.9677 | |
| gduggal-bwafb | INDEL | * | segdup | homalt | 98.7493 | 98.7500 | 98.7487 | 93.7209 | 948 | 12 | 947 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 66.9905 | 53.7415 | 88.9096 | 95.4327 | 948 | 816 | 954 | 119 | 18 | 15.1261 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9002 | 95.4637 | 88.5932 | 82.0967 | 947 | 45 | 932 | 120 | 15 | 12.5000 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002complexvar | hetalt | 80.5939 | 70.0444 | 94.8847 | 81.8132 | 947 | 405 | 946 | 51 | 50 | 98.0392 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3191 | 99.1623 | 99.4764 | 77.1586 | 947 | 8 | 950 | 5 | 1 | 20.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 87.3110 | 82.9974 | 92.0976 | 77.0179 | 947 | 194 | 944 | 81 | 55 | 67.9012 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.0978 | 97.8306 | 96.3760 | 82.9898 | 947 | 21 | 851 | 32 | 22 | 68.7500 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.6779 | 97.8306 | 97.5258 | 65.0198 | 947 | 21 | 946 | 24 | 10 | 41.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 35.7791 | 0.0000 | 0.0000 | 946 | 1698 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | het | 84.9192 | 74.6057 | 98.5417 | 92.9073 | 946 | 322 | 946 | 14 | 5 | 35.7143 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9022 | 98.6444 | 99.1614 | 72.5547 | 946 | 13 | 946 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9022 | 98.6444 | 99.1614 | 72.2190 | 946 | 13 | 946 | 8 | 6 | 75.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9022 | 98.6444 | 99.1614 | 72.9208 | 946 | 13 | 946 | 8 | 6 | 75.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 86.2527 | 79.1632 | 94.7368 | 71.2121 | 946 | 249 | 18 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | * | 80.7260 | 70.7025 | 94.0610 | 93.9470 | 946 | 392 | 1172 | 74 | 36 | 48.6486 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.9960 | 97.6240 | 96.3760 | 83.1102 | 945 | 23 | 851 | 32 | 22 | 68.7500 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3694 | 98.9529 | 99.7895 | 80.5964 | 945 | 10 | 948 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 94.7783 | 93.2873 | 96.3178 | 48.2447 | 945 | 68 | 994 | 38 | 37 | 97.3684 | |
| hfeng-pmm3 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.4729 | 95.2621 | 99.7888 | 69.4023 | 945 | 47 | 945 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.0472 | 97.6240 | 96.4773 | 83.0378 | 945 | 23 | 849 | 31 | 21 | 67.7419 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 80.1806 | 69.7709 | 94.2412 | 74.1188 | 944 | 409 | 1211 | 74 | 69 | 93.2432 | |
| dgrover-gatk | INDEL | D6_15 | HG002complexvar | hetalt | 94.7256 | 93.1885 | 96.3143 | 48.2949 | 944 | 69 | 993 | 38 | 37 | 97.3684 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 87.5573 | 82.7344 | 92.9773 | 75.9228 | 944 | 197 | 940 | 71 | 43 | 60.5634 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8890 | 98.8482 | 98.9300 | 77.8496 | 944 | 11 | 1017 | 11 | 2 | 18.1818 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 69.0921 | 61.2589 | 79.2222 | 54.8419 | 944 | 597 | 1426 | 374 | 353 | 94.3850 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4201 | 99.1588 | 99.6829 | 84.8446 | 943 | 8 | 943 | 3 | 1 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l250_m2_e1 | homalt | 99.4201 | 99.6829 | 99.1588 | 88.2127 | 943 | 3 | 943 | 8 | 4 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | homalt | 99.4201 | 99.6829 | 99.1588 | 88.1481 | 943 | 3 | 943 | 8 | 4 | 50.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.2804 | 98.3316 | 98.2292 | 73.6842 | 943 | 16 | 943 | 17 | 11 | 64.7059 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | homalt | 99.6815 | 99.5772 | 99.7861 | 89.7714 | 942 | 4 | 933 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 78.1375 | 85.3261 | 72.0660 | 79.7424 | 942 | 162 | 1179 | 457 | 238 | 52.0788 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | homalt | 99.3671 | 99.5772 | 99.1579 | 88.1116 | 942 | 4 | 942 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5356 | 98.2273 | 98.8458 | 72.2319 | 942 | 17 | 942 | 11 | 9 | 81.8182 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4189 | 98.9485 | 99.8938 | 85.6381 | 941 | 10 | 941 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 82.8282 | 98.9485 | 71.2246 | 86.5324 | 941 | 10 | 948 | 383 | 192 | 50.1305 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | homalt | 99.6822 | 99.4715 | 99.8938 | 87.1662 | 941 | 5 | 941 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 82.6526 | 70.7519 | 99.3664 | 48.9213 | 941 | 389 | 941 | 6 | 4 | 66.6667 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | het | 44.6395 | 28.9183 | 97.8170 | 82.5282 | 941 | 2313 | 941 | 21 | 1 | 4.7619 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | * | 45.6242 | 32.2702 | 77.8329 | 80.3319 | 941 | 1975 | 941 | 268 | 239 | 89.1791 | |