PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20151-20200 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | * | segdup | homalt | 99.4802 | 99.6875 | 99.2739 | 93.3014 | 957 | 3 | 957 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 57.4807 | 40.4480 | 99.2929 | 38.4711 | 957 | 1409 | 983 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.4054 | 96.4718 | 98.3573 | 68.7720 | 957 | 35 | 958 | 16 | 6 | 37.5000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 80.9161 | 72.4451 | 91.6304 | 55.0342 | 957 | 364 | 843 | 77 | 76 | 98.7013 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.3325 | 89.8592 | 99.2746 | 57.8234 | 957 | 108 | 958 | 7 | 4 | 57.1429 | |
| gduggal-bwaplat | INDEL | I1_5 | segdup | * | 94.4660 | 90.2738 | 99.0664 | 96.2092 | 956 | 103 | 955 | 9 | 6 | 66.6667 | |
| raldana-dualsentieon | INDEL | * | segdup | homalt | 99.2731 | 99.5833 | 98.9648 | 93.2239 | 956 | 4 | 956 | 10 | 9 | 90.0000 | |
| ltrigg-rtg1 | INDEL | * | segdup | homalt | 99.6351 | 99.5833 | 99.6868 | 92.9210 | 956 | 4 | 955 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2719 | 98.7603 | 99.7888 | 58.8261 | 956 | 12 | 945 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l250_m1_e0 | het | 59.5668 | 53.4415 | 67.2779 | 93.2143 | 955 | 832 | 954 | 464 | 21 | 4.5259 | |
| qzeng-custom | INDEL | * | segdup | homalt | 98.3551 | 99.4792 | 97.2561 | 92.3549 | 955 | 5 | 957 | 27 | 15 | 55.5556 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.6824 | 72.6236 | 90.7531 | 35.9976 | 955 | 360 | 952 | 97 | 93 | 95.8763 | |
| egarrison-hhga | INDEL | * | segdup | homalt | 99.4792 | 99.4792 | 99.4792 | 93.5414 | 955 | 5 | 955 | 5 | 5 | 100.0000 | |
| jlack-gatk | INDEL | * | segdup | homalt | 99.3240 | 99.4792 | 99.1693 | 93.4858 | 955 | 5 | 955 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | segdup | homalt | 99.5827 | 99.4792 | 99.6865 | 92.2340 | 955 | 5 | 954 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | segdup | * | 91.1537 | 90.0850 | 92.2481 | 94.2204 | 954 | 105 | 952 | 80 | 67 | 83.7500 | |
| ckim-vqsr | SNP | tv | map_l150_m2_e0 | homalt | 37.8797 | 23.3652 | 100.0000 | 91.8062 | 954 | 3129 | 954 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | segdup | homalt | 99.1684 | 99.3750 | 98.9627 | 93.3714 | 954 | 6 | 954 | 10 | 9 | 90.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.8302 | 90.7619 | 94.9950 | 53.7071 | 953 | 97 | 949 | 50 | 49 | 98.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.6299 | 72.3065 | 88.6040 | 54.8263 | 953 | 365 | 933 | 120 | 112 | 93.3333 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7906 | 99.7906 | 99.7906 | 80.5736 | 953 | 2 | 953 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | het | 92.1663 | 93.3399 | 91.0220 | 88.6047 | 953 | 68 | 953 | 94 | 59 | 62.7660 | |
| jpowers-varprowl | INDEL | D16_PLUS | HG002complexvar | het | 82.6837 | 86.0885 | 79.5380 | 63.2839 | 953 | 154 | 964 | 248 | 240 | 96.7742 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7906 | 99.7906 | 99.7906 | 80.2523 | 953 | 2 | 953 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7906 | 99.7906 | 99.7906 | 80.3781 | 953 | 2 | 953 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7904 | 99.7906 | 99.7901 | 80.0042 | 953 | 2 | 951 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 34.0836 | 24.4547 | 56.2198 | 65.7568 | 953 | 2944 | 931 | 725 | 695 | 95.8621 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7906 | 99.7906 | 99.7906 | 80.4703 | 953 | 2 | 953 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8428 | 99.7906 | 99.8952 | 79.5848 | 953 | 2 | 953 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8428 | 99.7906 | 99.8952 | 79.6675 | 953 | 2 | 953 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | het | 80.7469 | 68.4400 | 98.4504 | 89.8946 | 952 | 439 | 953 | 15 | 5 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7020 | 98.3471 | 99.0596 | 62.1590 | 952 | 16 | 948 | 9 | 4 | 44.4444 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3235 | 99.6859 | 98.9637 | 77.1327 | 952 | 3 | 955 | 10 | 1 | 10.0000 | |
| asubramanian-gatk | INDEL | * | segdup | homalt | 99.1667 | 99.1667 | 99.1667 | 93.6609 | 952 | 8 | 952 | 8 | 7 | 87.5000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7030 | 98.3471 | 99.0615 | 63.1437 | 952 | 16 | 950 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 59.1118 | 53.1250 | 66.6194 | 50.7504 | 952 | 840 | 940 | 471 | 467 | 99.1507 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7904 | 99.6859 | 99.8951 | 79.4035 | 952 | 3 | 952 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7378 | 99.5812 | 99.8950 | 79.8902 | 951 | 4 | 951 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7378 | 99.5812 | 99.8950 | 80.4517 | 951 | 4 | 951 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6855 | 99.5812 | 99.7901 | 80.3667 | 951 | 4 | 951 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6855 | 99.5812 | 99.7901 | 80.3667 | 951 | 4 | 951 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6333 | 99.5812 | 99.6855 | 77.3934 | 951 | 4 | 951 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 79.5099 | 74.9211 | 84.6975 | 89.9093 | 950 | 318 | 952 | 172 | 40 | 23.2558 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 68.1961 | 80.6452 | 59.0765 | 60.9919 | 950 | 228 | 934 | 647 | 601 | 92.8903 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 84.2141 | 73.5864 | 98.4298 | 33.7451 | 950 | 341 | 1003 | 16 | 15 | 93.7500 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.5461 | 98.1405 | 98.9551 | 62.1889 | 950 | 18 | 947 | 10 | 7 | 70.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_siren | homalt | 84.8214 | 78.3828 | 92.4125 | 74.4596 | 950 | 262 | 950 | 78 | 75 | 96.1538 | |
| rpoplin-dv42 | INDEL | * | segdup | homalt | 99.2685 | 98.9583 | 99.5807 | 93.3565 | 950 | 10 | 950 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.6527 | 80.4403 | 87.1324 | 45.1060 | 950 | 231 | 948 | 140 | 140 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6329 | 99.4764 | 99.7899 | 79.2908 | 950 | 5 | 950 | 2 | 1 | 50.0000 | |