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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19951-20000 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5517 | 99.4030 | 99.7009 | 66.4548 | 999 | 6 | 1000 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5517 | 99.4030 | 99.7009 | 66.4548 | 999 | 6 | 1000 | 3 | 2 | 66.6667 | |
| jlack-gatk | INDEL | * | map_l100_m0_e0 | het | 91.5391 | 97.8452 | 85.9966 | 90.8195 | 999 | 22 | 1001 | 163 | 8 | 4.9080 | |
| jli-custom | INDEL | * | map_l100_m0_e0 | het | 97.8452 | 97.8452 | 97.8452 | 85.1642 | 999 | 22 | 999 | 22 | 5 | 22.7273 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5504 | 99.4030 | 99.6982 | 59.0103 | 999 | 6 | 991 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 27.4935 | 24.7277 | 30.9558 | 84.2395 | 999 | 3041 | 1276 | 2846 | 368 | 12.9304 | |
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | het | 89.7886 | 97.7473 | 83.0283 | 91.0144 | 998 | 23 | 998 | 204 | 61 | 29.9020 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002complexvar | het | 84.6320 | 90.1536 | 79.7478 | 64.8768 | 998 | 109 | 1012 | 257 | 243 | 94.5525 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3532 | 99.3035 | 99.4030 | 66.0014 | 998 | 7 | 999 | 6 | 3 | 50.0000 | |
| anovak-vg | INDEL | D1_5 | segdup | * | 91.5860 | 90.4805 | 92.7189 | 94.7590 | 998 | 105 | 1006 | 79 | 52 | 65.8228 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.5967 | 81.0065 | 84.2506 | 51.7959 | 998 | 234 | 995 | 186 | 167 | 89.7849 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5016 | 99.3035 | 99.7006 | 63.3236 | 998 | 7 | 999 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3525 | 99.2040 | 99.5015 | 66.2630 | 997 | 8 | 998 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | hetalt | 78.9505 | 73.7426 | 84.9498 | 82.4839 | 997 | 355 | 508 | 90 | 54 | 60.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 53.5889 | 45.7759 | 64.6178 | 56.5306 | 997 | 1181 | 2071 | 1134 | 332 | 29.2769 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.0289 | 75.8175 | 87.0096 | 52.5248 | 997 | 318 | 998 | 149 | 131 | 87.9195 | |
| mlin-fermikit | INDEL | D1_5 | map_siren | homalt | 85.9425 | 85.3596 | 86.5334 | 78.1760 | 997 | 171 | 996 | 155 | 149 | 96.1290 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 48.9231 | 45.1335 | 53.4074 | 60.1656 | 997 | 1212 | 1105 | 964 | 732 | 75.9336 | |
| anovak-vg | INDEL | * | map_l150_m1_e0 | * | 72.5622 | 74.5142 | 70.7099 | 89.9578 | 997 | 341 | 1026 | 425 | 224 | 52.7059 | |
| gduggal-bwavard | INDEL | * | map_l100_m0_e0 | het | 87.7147 | 97.5514 | 79.6800 | 90.8905 | 996 | 25 | 996 | 254 | 63 | 24.8031 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4000 | 99.1045 | 99.6973 | 59.5840 | 996 | 9 | 988 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.0091 | 80.8442 | 83.2080 | 53.2969 | 996 | 236 | 996 | 201 | 178 | 88.5572 | |
| anovak-vg | INDEL | D1_5 | HG002compoundhet | het | 54.0229 | 57.5810 | 50.8790 | 62.2806 | 995 | 733 | 4428 | 4275 | 2764 | 64.6550 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2009 | 99.0050 | 99.3976 | 60.0802 | 995 | 10 | 990 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | D16_PLUS | * | homalt | 72.0773 | 58.8061 | 93.0841 | 70.1867 | 995 | 697 | 996 | 74 | 68 | 91.8919 | |
| egarrison-hhga | INDEL | * | map_l100_m0_e0 | het | 97.1755 | 97.3555 | 96.9961 | 85.9783 | 994 | 27 | 1001 | 31 | 7 | 22.5806 | |
| jpowers-varprowl | INDEL | D16_PLUS | * | homalt | 72.0589 | 58.7470 | 93.1712 | 70.1813 | 994 | 698 | 996 | 73 | 69 | 94.5205 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.1245 | 94.5714 | 97.7295 | 52.4859 | 993 | 57 | 990 | 23 | 9 | 39.1304 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | homalt | 85.5333 | 78.7470 | 93.5994 | 81.7141 | 993 | 268 | 1360 | 93 | 14 | 15.0538 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 91.5223 | 87.0289 | 96.5049 | 73.3713 | 993 | 148 | 994 | 36 | 34 | 94.4444 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.4339 | 93.3208 | 80.4936 | 78.1982 | 992 | 71 | 1011 | 245 | 30 | 12.2449 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 69.8290 | 73.2103 | 66.7462 | 59.7115 | 992 | 363 | 839 | 418 | 413 | 98.8038 | |
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | het | 97.0778 | 97.1596 | 96.9961 | 85.3472 | 992 | 29 | 1001 | 31 | 4 | 12.9032 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.5169 | 66.3764 | 99.1444 | 42.1411 | 991 | 502 | 927 | 8 | 5 | 62.5000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | het | 97.3501 | 97.0617 | 97.6401 | 84.2716 | 991 | 30 | 993 | 24 | 1 | 4.1667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8041 | 98.6070 | 99.0020 | 64.5686 | 991 | 14 | 992 | 10 | 9 | 90.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1002 | 98.6070 | 99.5984 | 66.0300 | 991 | 14 | 992 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 84.3756 | 73.2446 | 99.4960 | 78.1450 | 991 | 362 | 987 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | * | 50.6394 | 33.9506 | 99.5976 | 97.7410 | 990 | 1926 | 990 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9992 | 98.4080 | 99.5976 | 63.6430 | 989 | 16 | 990 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 81.9098 | 72.2953 | 94.4737 | 87.2301 | 989 | 379 | 1436 | 84 | 16 | 19.0476 | |
| qzeng-custom | INDEL | * | map_l125_m1_e0 | het | 82.2615 | 74.0824 | 92.4708 | 92.9115 | 989 | 346 | 1265 | 103 | 35 | 33.9806 | |
| anovak-vg | INDEL | D1_5 | map_l125_m2_e1 | * | 83.4613 | 85.4797 | 81.5359 | 87.6226 | 989 | 168 | 998 | 226 | 83 | 36.7257 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0973 | 98.3085 | 99.8990 | 63.5493 | 988 | 17 | 989 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0477 | 98.3085 | 99.7982 | 63.4722 | 988 | 17 | 989 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | het | 95.6303 | 96.7679 | 94.5192 | 88.5902 | 988 | 33 | 983 | 57 | 4 | 7.0175 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 69.0451 | 54.2606 | 94.9038 | 89.2027 | 987 | 832 | 987 | 53 | 38 | 71.6981 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 69.0451 | 54.2606 | 94.9038 | 89.2027 | 987 | 832 | 987 | 53 | 38 | 71.6981 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | het | 85.1353 | 81.5550 | 89.0443 | 91.4683 | 986 | 223 | 1146 | 141 | 27 | 19.1489 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8473 | 98.1095 | 99.5964 | 63.8980 | 986 | 19 | 987 | 4 | 3 | 75.0000 | |