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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
1951-2000 / 86044 show all
bgallagher-sentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6226
99.6991
99.5463
74.7408
3313610033130151120
79.4702
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6271
99.6871
99.5672
75.3638
3313210433126144110
76.3889
hfeng-pmm1INDELI1_5HG002complexvar*
99.5778
99.2956
99.8615
56.6148
33128235331714629
63.0435
hfeng-pmm3INDELI1_5HG002complexvar*
99.5912
99.2956
99.8886
56.4158
33128235331723724
64.8649
hfeng-pmm2INDELI1_5HG002complexvar*
99.5522
99.2597
99.8464
56.6743
33116247331595138
74.5098
ckim-dragenINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6778
99.6209
99.7347
74.4322
33110126330888854
61.3636
astatham-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5983
99.6119
99.5848
74.9525
3310712933101138106
76.8116
rpoplin-dv42INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2133
99.5848
98.8446
73.6714
3309813833109387353
91.2145
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5967
99.5697
99.6236
75.3470
3309314333087125100
80.0000
qzeng-customSNPtimap_sirenhomalt
93.0187
87.2719
99.5758
47.6263
33090482632626139121
87.0504
jli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6490
99.5246
99.7737
73.4430
33078158330717556
74.6667
qzeng-customSNP*map_l125_m1_e0*
83.4865
72.9742
97.5374
82.2302
330771225032716826701
84.8668
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5319
99.4945
99.5693
75.4597
3306816833062143107
74.8252
ltrigg-rtg2INDELI1_5HG002complexvar*
99.3818
99.0798
99.6856
52.9504
330553073234210266
64.7059
rpoplin-dv42INDELI1_5HG002complexvar*
99.3509
99.0558
99.6477
56.5141
3304831533091117105
89.7436
ckim-gatkINDELI1_5HG002complexvar*
99.4404
99.0498
99.8341
56.8511
33046317330925541
74.5455
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2219
99.3862
99.0582
74.4553
3303220433027314203
64.6497
jli-customINDELI1_5HG002complexvar*
99.4264
98.9689
99.8882
55.8919
33019344330523727
72.9730
jmaeng-gatkINDELI1_5HG002complexvar*
99.3649
98.9270
99.8067
56.9963
33005358330516446
71.8750
ckim-vqsrINDELI1_5HG002complexvar*
99.3737
98.9030
99.8489
56.8918
32997366330425041
82.0000
raldana-dualsentieonINDELI1_5HG002complexvar*
99.3540
98.8640
99.8488
56.1047
32984379330265041
82.0000
asubramanian-gatkSNP*map_l100_m2_e1*
61.2013
44.1254
99.8365
85.2564
3297841759329725414
25.9259
ltrigg-rtg1INDELI1_5HG002complexvar*
99.2488
98.7471
99.7557
52.7857
32944418322597948
60.7595
cchapple-customINDELI1_5HG002complexvar*
99.1800
98.7291
99.6350
52.8581
3293942431939117104
88.8889
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3353
99.0372
99.6352
71.5761
329163203277312043
35.8333
asubramanian-gatkINDELI1_5HG002complexvar*
99.2344
98.6572
99.8183
57.3625
32915448329676050
83.3333
ckim-isaacSNPtimap_l100_m2_e0*
80.3204
67.1841
99.8422
64.2807
3289416067328985210
19.2308
egarrison-hhgaINDELI1_5HG002complexvar*
98.9362
98.5823
99.2928
54.0549
3289047332852234120
51.2821
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.7746
98.8928
90.9856
70.5872
328683683328832983156
95.6944
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
85.9332
98.8085
76.0265
77.4229
3284039632867103649929
95.8028
ndellapenna-hhgaINDELI1_5HG002complexvar*
98.8448
98.3844
99.3095
53.7677
3282453932792228116
50.8772
asubramanian-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1330
98.7273
99.5420
75.3696
3281342332819151102
67.5497
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1729
98.6761
99.6748
69.3950
3279644042603139118
84.8921
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50*
92.1428
89.6098
94.8232
41.9297
3279038023234817661366
77.3499
hfeng-pmm2INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1951
98.6340
99.7626
72.6726
32782454327757858
74.3590
hfeng-pmm3INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1963
98.5919
99.8081
71.9245
32768468327626344
69.8413
ndellapenna-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.8642
98.5648
91.4314
69.9321
327594773326031172975
95.4443
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.1552
98.5347
99.7836
72.0617
32749487327427145
63.3803
raldana-dualsentieonINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0441
98.5197
99.5742
73.0561
3274449232737140116
82.8571
eyeh-varpipeSNP*map_l100_m0_e0*
98.1181
99.6468
96.6356
72.2026
3272511631854110929
2.6150
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
86.2553
98.3091
76.8345
75.3229
326745623251198029224
94.1032
hfeng-pmm3SNP*map_l100_m0_e0*
99.4850
99.4123
99.5578
68.0774
326481933264414521
14.4828
hfeng-pmm2SNP*map_l100_m0_e0*
99.2701
99.4001
99.1404
70.5461
326441973264028334
12.0141
bgallagher-sentieonSNP*map_l100_m0_e0*
99.1340
99.3545
98.9146
69.7273
326292123262535860
16.7598
qzeng-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.6704
98.1255
97.2195
71.9856
32613623417831195869
72.7197
qzeng-customINDELI1_5HG002complexvar*
98.4325
97.7100
99.1658
52.3895
3259976432572274135
49.2701
dgrover-gatkSNP*map_l100_m0_e0*
99.2175
99.2266
99.2084
71.3904
325872543258326057
21.9231
hfeng-pmm1SNP*map_l100_m0_e0*
99.3989
99.1931
99.6055
67.8013
325762653257212937
28.6822
ltrigg-rtg1INDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8475
97.9811
99.7293
70.4300
32565671324218829
32.9545
ckim-isaacSNP*map_l100_m2_e1het
81.8788
69.4358
99.7550
67.9468
3256414334325718012
15.0000